Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1019906	0.81[CEU][hapmap]
rs10245285	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[YRI][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10255276	0.83[JPT][hapmap]
rs10755842	0.88[CEU][hapmap];0.86[CHB][hapmap]
rs10950520	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11977804	0.83[CEU][hapmap]
rs11983089	0.81[CEU][hapmap]
rs12699609	0.87[CEU][hapmap];0.95[CHB][hapmap]
rs12699611	0.92[CEU][hapmap];0.95[CHB][hapmap];0.84[ASN][1000 genomes]
rs1319592	0.85[CEU][hapmap]
rs1319593	0.88[CEU][hapmap]
rs1469618	0.88[CEU][hapmap]
rs17168091	0.83[JPT][hapmap]
rs17168097	0.85[CEU][hapmap]
rs17168106	0.89[CEU][hapmap]
rs17168109	0.82[CEU][hapmap]
rs2116532	0.88[CEU][hapmap];0.86[CHB][hapmap]
rs4721331	0.82[CEU][hapmap]
rs6946703	0.82[CEU][hapmap];0.82[CHB][hapmap]
rs6947526	0.81[CEU][hapmap]
rs6958890	0.84[CEU][hapmap]
rs6963946	0.88[CEU][hapmap]
rs6972310	0.83[JPT][hapmap]
rs6977358	0.91[JPT][hapmap]
rs991355	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv606281	chr7:14388381-14443963	Weak transcription Flanking Active TSS Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14418600-14428400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr7:14421800-14425400	Weak transcription	HSMM	muscle
3	chr7:14422000-14425600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr7:14424400-14425400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:14424400-14426200	Enhancers	Muscle Satellite Cultured Cells	--
6	chr7:14424400-14426400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr7:14424400-14426400	Enhancers	NHEK	skin

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