Variant report

Variant	rs6977358
Chromosome Location	chr7:14398086-14398087
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1019906	0.81[CHB][hapmap];0.80[CHD][hapmap];0.85[ASN][1000 genomes]
rs10245285	0.86[JPT][hapmap]
rs10247569	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10255276	1.00[CEU][hapmap];0.85[CHB][hapmap];0.82[CHD][hapmap];0.80[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap]
rs10950520	0.91[JPT][hapmap]
rs12536853	1.00[YRI][hapmap]
rs12699581	1.00[YRI][hapmap]
rs12699613	0.91[JPT][hapmap]
rs17168087	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs17168091	1.00[CEU][hapmap];0.85[CHB][hapmap];0.85[CHD][hapmap];0.80[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17708126	1.00[YRI][hapmap]
rs17775181	1.00[YRI][hapmap]
rs2357898	0.81[EUR][1000 genomes]
rs6958890	0.80[CHD][hapmap];0.83[JPT][hapmap]
rs6972310	0.81[CHB][hapmap];0.84[CHD][hapmap];0.80[GIH][hapmap];0.91[JPT][hapmap];0.81[MEX][hapmap];0.87[TSI][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs991355	0.82[CEU][hapmap];0.91[JPT][hapmap];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv606281	chr7:14388381-14443963	Weak transcription Flanking Active TSS Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
3	nsv967428	chr7:14390125-14405382	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6977358	VWDE	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links