Variant report

Variant	rs1019906
Chromosome Location	chr7:14402784-14402785
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10755842	0.92[CEU][hapmap];0.82[CHB][hapmap];0.92[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap]
rs11977804	0.82[CEU][hapmap]
rs12699609	0.92[CEU][hapmap];0.80[GIH][hapmap];0.86[JPT][hapmap];0.96[MEX][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12699611	0.81[CEU][hapmap];0.82[JPT][hapmap];0.91[MEX][hapmap];0.88[TSI][hapmap];0.82[EUR][1000 genomes]
rs12699613	0.81[CEU][hapmap]
rs1319592	0.81[CEU][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1319593	0.84[CEU][hapmap];0.88[MEX][hapmap];0.90[TSI][hapmap];0.82[EUR][1000 genomes]
rs1469618	0.84[CEU][hapmap];0.88[MEX][hapmap];0.90[TSI][hapmap]
rs17168097	0.80[CEU][hapmap];0.85[CHB][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17168106	0.84[CEU][hapmap];0.80[CHB][hapmap]
rs17168109	0.80[CEU][hapmap]
rs17775102	0.85[CHB][hapmap];0.80[JPT][hapmap];1.00[YRI][hapmap]
rs2116532	0.92[CEU][hapmap];0.82[CHB][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap]
rs4721330	0.81[CHB][hapmap];0.85[TSI][hapmap]
rs6947526	0.80[MEX][hapmap];0.81[TSI][hapmap]
rs6958890	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.97[TSI][hapmap]
rs6963946	0.84[CEU][hapmap];0.88[MEX][hapmap];0.90[TSI][hapmap]
rs6971911	0.80[CHB][hapmap];0.82[JPT][hapmap];0.86[TSI][hapmap];0.80[ASN][1000 genomes]
rs6977358	0.81[CHB][hapmap];0.80[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv606281	chr7:14388381-14443963	Weak transcription Flanking Active TSS Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
3	nsv967428	chr7:14390125-14405382	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1019906	ARL4A	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14402200-14404600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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