Variant report

Variant	rs6947526
Chromosome Location	chr7:14415253-14415254
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1019906	0.80[MEX][hapmap];0.81[TSI][hapmap]
rs10755842	0.80[MEX][hapmap];0.86[TSI][hapmap]
rs10950520	0.81[CHB][hapmap]
rs11766474	0.90[JPT][hapmap]
rs11977804	0.90[JPT][hapmap]
rs11983089	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12155191	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12333379	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12699609	0.80[CHB][hapmap];0.83[MEX][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12699610	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12699611	0.81[CEU][hapmap];0.81[CHB][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12699612	0.81[YRI][hapmap]
rs12699613	0.81[CEU][hapmap]
rs1319592	0.81[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1319593	0.82[ASW][hapmap];0.85[CEU][hapmap];0.95[CHB][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.90[TSI][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1469618	0.85[CEU][hapmap];0.95[CHB][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.92[MEX][hapmap];0.90[TSI][hapmap]
rs17168097	0.92[CEU][hapmap];0.90[JPT][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17168106	0.85[CEU][hapmap];0.90[JPT][hapmap]
rs17168109	0.90[JPT][hapmap]
rs2116532	0.88[MEX][hapmap];0.86[TSI][hapmap]
rs2217572	0.88[CEU][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap]
rs4721330	0.96[CEU][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.85[TSI][hapmap]
rs4721331	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6946703	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6958890	0.83[MEX][hapmap];0.84[TSI][hapmap];0.85[YRI][hapmap]
rs6963946	0.85[CEU][hapmap];1.00[CHB][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.90[TSI][hapmap]
rs6971911	0.91[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv606281	chr7:14388381-14443963	Weak transcription Flanking Active TSS Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6947526	ARL4A	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14413600-14415600	Enhancers	H9 Cell Line	embryonic stem cell
2	chr7:14414000-14415600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr7:14414200-14415400	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr7:14414200-14416000	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr7:14414200-14416800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr7:14414400-14415600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr7:14414400-14416000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr7:14415200-14415800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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