Variant report

Variant	rs10245285
Chromosome Location	chr7:14424939-14424940
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10755842	0.81[CEU][hapmap];0.86[CHB][hapmap]
rs10950520	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12699609	0.95[CHB][hapmap];0.87[GIH][hapmap];0.86[TSI][hapmap]
rs12699611	0.92[CEU][hapmap];0.95[CHB][hapmap];0.84[GIH][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs12699613	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[YRI][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1319593	0.81[CEU][hapmap]
rs1469618	0.81[CEU][hapmap]
rs17168106	0.84[CEU][hapmap]
rs2116532	0.81[CEU][hapmap];0.86[CHB][hapmap]
rs6946703	0.81[CHB][hapmap]
rs6963946	0.81[CEU][hapmap]
rs6977358	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv606281	chr7:14388381-14443963	Weak transcription Flanking Active TSS Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14418600-14428400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr7:14421800-14425400	Weak transcription	HSMM	muscle
3	chr7:14422000-14425600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr7:14424400-14425400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:14424400-14426200	Enhancers	Muscle Satellite Cultured Cells	--
6	chr7:14424400-14426400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr7:14424400-14426400	Enhancers	NHEK	skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links