Variant report
| Variant | rs12700719 |
|---|---|
| Chromosome Location | chr7:26314207-26314208 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:26313227..26315137-chr7:26318290..26321269,2 | K562 | blood: | |
| 2 | chr7:26313684..26316528-chr7:26331156..26333725,2 | K562 | blood: | |
| 3 | chr7:26241958..26244328-chr7:26313470..26315628,2 | K562 | blood: | |
| 4 | chr7:26226202..26228605-chr7:26311727..26314300,2 | K562 | blood: | |
| 5 | chr7:26240189..26242389-chr7:26313126..26315933,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000122566 | Chromatin interaction |
| ENSG00000086300 | Chromatin interaction |
| ENSG00000122565 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs13225692 | 1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.87[EUR][1000 genomes] |
| rs13230913 | 1.00[CEU][hapmap] |
| rs13233294 | 1.00[AFR][1000 genomes];0.87[EUR][1000 genomes] |
| rs13233506 | 1.00[AFR][1000 genomes];0.87[EUR][1000 genomes] |
| rs13245047 | 1.00[AFR][1000 genomes];0.87[EUR][1000 genomes] |
| rs17153367 | 1.00[AFR][1000 genomes] |
| rs34031173 | 1.00[AFR][1000 genomes];0.87[EUR][1000 genomes] |
| rs34757357 | 1.00[CEU][hapmap] |
| rs34778871 | 1.00[AFR][1000 genomes] |
| rs34899863 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs35254059 | 1.00[CEU][hapmap] |
| rs35536859 | 0.87[EUR][1000 genomes] |
| rs35595411 | 0.87[EUR][1000 genomes] |
| rs6959448 | 1.00[AFR][1000 genomes] |
| rs71521752 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1021308 | chr7:26116605-26419720 | Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 166 gene(s) | inside rSNPs | diseases |
| 2 | nsv1018971 | chr7:26161228-26380361 | Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 165 gene(s) | inside rSNPs | diseases |
| 3 | nsv1018352 | chr7:26298095-26341825 | Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 4 | nsv1029596 | chr7:26302739-26737913 | Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
| 5 | nsv538804 | chr7:26302739-26737913 | Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
