Variant report

Variant	rs34031173
Chromosome Location	chr7:26320194-26320195
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:26313227..26315137-chr7:26318290..26321269,2	K562	blood:
2	chr7:26239322..26242425-chr7:26317596..26320562,4	K562	blood:
3	chr7:26225358..26228144-chr7:26318718..26321292,4	K562	blood:
4	chr7:26236967..26245040-chr7:26316050..26322188,15	MCF-7	breast:
5	chr7:26225358..26228940-chr7:26318718..26321554,4	K562	blood:
6	chr7:26318088..26320982-chr7:26326955..26329632,2	MCF-7	breast:
7	chr7:26318107..26320875-chr7:26702429..26705319,2	MCF-7	breast:
8	chr7:26318218..26320268-chr7:26403351..26405255,2	MCF-7	breast:
9	chr7:26234755..26243649-chr7:26316786..26321454,13	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12700719	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs13225692	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13233294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13233506	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13245047	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17153367	1.00[AFR][1000 genomes]
rs34757357	1.00[AMR][1000 genomes]
rs34778871	1.00[AFR][1000 genomes]
rs34899863	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs35536859	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35595411	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6959448	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71521752	1.00[AFR][1000 genomes]
rs71521753	1.00[AMR][1000 genomes]
rs71521759	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021308	chr7:26116605-26419720	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
2	nsv1018971	chr7:26161228-26380361	Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	nsv1018352	chr7:26298095-26341825	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26318200-26321800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:26319400-26321600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr7:26319400-26321800	Weak transcription	Primary B cells from peripheral blood	blood
4	chr7:26319400-26324000	Weak transcription	Placenta	Placenta
5	chr7:26319400-26326600	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr7:26319600-26321600	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr7:26319600-26321800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr7:26319600-26322200	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr7:26320000-26321000	Enhancers	K562	blood
10	chr7:26320000-26324000	Weak transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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