Variant report

Variant	rs12701709
Chromosome Location	chr7:39310867-39310868
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11514715	0.82[YRI][hapmap];0.86[AFR][1000 genomes]
rs11535192	0.96[YRI][hapmap];0.91[AFR][1000 genomes]
rs11981474	0.81[CHB][hapmap]
rs12531819	0.83[JPT][hapmap]
rs13246220	0.91[AFR][1000 genomes]
rs35571700	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4283935	0.82[JPT][hapmap]
rs4318977	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4377848	0.81[CHB][hapmap]
rs4629764	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs4723836	0.82[JPT][hapmap]
rs6462901	0.85[AFR][1000 genomes]
rs6951074	0.81[CHB][hapmap]
rs6960580	0.81[CHB][hapmap]
rs6968121	0.81[CHB][hapmap]
rs6968147	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015572	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv538821	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv887969	chr7:39265429-39391875	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39306000-39311000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:39306000-39311000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr7:39306200-39311800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr7:39306800-39311000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr7:39310200-39312000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:39310600-39311200	Enhancers	Fetal Brain Male	brain
7	chr7:39310600-39311400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr7:39310600-39312200	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr7:39310800-39311400	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr7:39310800-39311400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr7:39310800-39311400	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
12	chr7:39310800-39311400	Enhancers	Fetal Brain Female	brain
13	chr7:39310800-39312000	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr7:39310800-39312200	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr7:39310800-39312200	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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