Variant report

Variant	rs11535192
Chromosome Location	chr7:39324349-39324350
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10228416	0.82[ASN][1000 genomes]
rs11514715	0.93[LWK][hapmap]
rs12701709	0.96[YRI][hapmap];0.91[AFR][1000 genomes]
rs13233706	0.86[AFR][1000 genomes]
rs13246220	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35571700	0.91[AFR][1000 genomes]
rs4318977	0.98[LWK][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes]
rs4621706	0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs4629764	0.92[YRI][hapmap]
rs6968147	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015572	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv538821	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv887969	chr7:39265429-39391875	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11535192	STARD3NL	cis	cerebellum	SCAN
rs11535192	ANLN	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39323200-39324400	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr7:39323200-39324400	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr7:39324000-39326600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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