Variant report

Variant	rs13233706
Chromosome Location	chr7:39324505-39324506
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:39309116..39310743-chr7:39323473..39325470,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10807900	0.95[ASN][1000 genomes]
rs11514715	0.89[AFR][1000 genomes]
rs11535192	0.86[AFR][1000 genomes]
rs12673726	0.82[EUR][1000 genomes]
rs12701705	0.85[ASN][1000 genomes]
rs12701714	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12701715	0.82[EUR][1000 genomes]
rs12701716	0.82[EUR][1000 genomes]
rs12701717	0.82[EUR][1000 genomes]
rs12701718	0.81[EUR][1000 genomes]
rs12701719	0.80[EUR][1000 genomes]
rs12701720	0.80[EUR][1000 genomes]
rs12701721	0.80[EUR][1000 genomes]
rs12701725	0.80[EUR][1000 genomes]
rs13246220	0.86[AFR][1000 genomes]
rs34074172	0.82[EUR][1000 genomes]
rs34421793	0.82[EUR][1000 genomes]
rs35489723	0.80[EUR][1000 genomes]
rs35939093	0.80[EUR][1000 genomes]
rs4072718	0.80[EUR][1000 genomes]
rs4072719	0.81[EUR][1000 genomes]
rs4130697	0.80[EUR][1000 genomes]
rs4130698	0.80[EUR][1000 genomes]
rs4236358	0.80[EUR][1000 genomes]
rs4314553	0.85[ASN][1000 genomes]
rs4316059	0.85[ASN][1000 genomes]
rs4498449	0.81[EUR][1000 genomes]
rs4509216	0.82[EUR][1000 genomes]
rs4530944	0.81[EUR][1000 genomes]
rs4549686	0.80[EUR][1000 genomes]
rs4582444	0.81[EUR][1000 genomes]
rs4615450	0.80[EUR][1000 genomes]
rs4723841	0.84[EUR][1000 genomes]
rs4723844	0.80[EUR][1000 genomes]
rs4723847	0.80[EUR][1000 genomes]
rs4723848	0.80[EUR][1000 genomes]
rs4723849	0.80[EUR][1000 genomes]
rs4723850	0.80[EUR][1000 genomes]
rs4989072	0.82[EUR][1000 genomes]
rs62453447	0.85[ASN][1000 genomes]
rs62453457	0.86[ASN][1000 genomes]
rs6462901	0.89[AFR][1000 genomes]
rs6949610	0.80[EUR][1000 genomes]
rs6949878	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7797767	0.80[EUR][1000 genomes]
rs7803411	0.82[EUR][1000 genomes]
rs9648478	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015572	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv538821	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv887969	chr7:39265429-39391875	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39324000-39326600	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr7:39324400-39325600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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