Variant report

Variant	rs12706282
Chromosome Location	chr7:120027288-120027289
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:120020344..120022950-chr7:120023648..120028182,4	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1014168	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1035014	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10488287	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10953908	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11773299	0.87[EUR][1000 genomes]
rs12533932	0.83[AMR][1000 genomes]
rs12539149	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12666459	0.83[AMR][1000 genomes]
rs12706276	0.80[AMR][1000 genomes]
rs12706279	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12706280	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1304206	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1860704	0.82[AMR][1000 genomes]
rs1860705	0.85[EUR][1000 genomes]
rs1990429	0.83[AMR][1000 genomes]
rs2191734	0.83[AMR][1000 genomes]
rs2191736	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2191737	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2402525	0.83[AMR][1000 genomes]
rs2402526	0.83[AMR][1000 genomes]
rs2402527	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4730955	0.81[AMR][1000 genomes]
rs4730956	0.83[AMR][1000 genomes]
rs4730958	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4730960	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6466741	0.83[AMR][1000 genomes]
rs6942715	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7792980	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7801487	0.81[AMR][1000 genomes]
rs7805413	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7810357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8180795	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024920	chr7:120002420-120083753	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv516686	chr7:120015843-120223084	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1026821	chr7:120020317-120190437	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120024800-120028800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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