Variant report

Variant	rs7801487
Chromosome Location	chr7:119930490-119930491
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:119923379..119926159-chr7:119930108..119932380,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10224017	0.91[ASN][1000 genomes]
rs10237275	0.81[ASN][1000 genomes]
rs10250387	0.81[ASN][1000 genomes]
rs10251877	0.88[ASN][1000 genomes]
rs1035014	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10488287	0.85[ASN][1000 genomes]
rs10953908	0.85[ASN][1000 genomes]
rs12533932	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12539149	0.81[AMR][1000 genomes]
rs12540162	0.83[AFR][1000 genomes]
rs12666459	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12706276	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12706279	0.83[ASN][1000 genomes]
rs12706280	0.85[ASN][1000 genomes]
rs12706282	0.81[AMR][1000 genomes]
rs1304206	0.85[ASN][1000 genomes]
rs17142585	0.81[ASN][1000 genomes]
rs1860704	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1990429	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2107994	0.88[ASN][1000 genomes]
rs2190183	0.81[ASN][1000 genomes]
rs2191734	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2191736	0.85[ASN][1000 genomes]
rs2191737	0.85[ASN][1000 genomes]
rs2402525	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2402526	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2402527	0.85[ASN][1000 genomes]
rs3735339	0.81[ASN][1000 genomes]
rs3814463	0.91[ASN][1000 genomes]
rs4730954	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4730955	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4730956	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4730958	0.85[ASN][1000 genomes]
rs4730960	0.85[ASN][1000 genomes]
rs6466739	0.88[ASN][1000 genomes]
rs6466740	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6466741	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6942715	0.85[ASN][1000 genomes]
rs6943223	0.80[ASN][1000 genomes]
rs7792980	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7805413	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7810357	0.81[AMR][1000 genomes]
rs8180795	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608326	chr7:119828331-119995890	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv1843078	chr7:119909603-119934006	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:119929000-119931000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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