Variant report

Variant	rs2190183
Chromosome Location	chr7:119862301-119862302
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10224017	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10224700	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10224809	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10237275	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10241520	0.89[EUR][1000 genomes]
rs10247464	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10250387	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10251877	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10252729	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10278455	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10279729	0.91[AMR][1000 genomes]
rs1035014	0.91[ASW][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.83[MEX][hapmap];0.86[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10488287	0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs10953908	0.80[ASN][1000 genomes]
rs12533932	0.91[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.83[MEX][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs12666459	0.91[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.90[MKK][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs12706276	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12706280	0.80[ASN][1000 genomes]
rs1304206	0.93[YRI][hapmap];0.80[ASN][1000 genomes]
rs17142555	0.81[ASN][1000 genomes]
rs17142585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1860704	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.84[MKK][hapmap];0.81[YRI][hapmap];0.88[ASN][1000 genomes]
rs1990429	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2107994	0.95[CEU][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2191734	0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2191736	0.87[CHD][hapmap];0.80[ASN][1000 genomes]
rs2191737	0.80[ASN][1000 genomes]
rs2402525	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.83[MEX][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2402526	0.91[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.83[MEX][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2402527	0.80[ASN][1000 genomes]
rs28532220	0.81[ASN][1000 genomes]
rs3735339	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3814463	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.83[TSI][hapmap];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4730954	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4730955	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4730956	0.91[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4730958	0.80[ASN][1000 genomes]
rs4730960	0.80[ASN][1000 genomes]
rs58778277	0.81[EUR][1000 genomes]
rs60578704	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62469497	0.81[EUR][1000 genomes]
rs6466739	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6466740	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6466741	0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs6942715	0.80[ASN][1000 genomes]
rs6943223	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6956408	0.81[ASN][1000 genomes]
rs6956570	0.81[ASN][1000 genomes]
rs6956643	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6974349	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7782622	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7790816	0.87[CHD][hapmap]
rs7792688	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7792980	0.91[ASW][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.88[GIH][hapmap];0.83[MEX][hapmap];0.84[MKK][hapmap];0.83[ASN][1000 genomes]
rs7795487	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7801487	0.81[ASN][1000 genomes]
rs7805413	0.91[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.83[MEX][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs8180795	0.85[YRI][hapmap];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831113	chr7:119683515-119886277	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv608326	chr7:119828331-119995890	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2190183	PTPRZ1	cis	parietal	SCAN
rs2190183	RNF133	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:119860800-119863400	Enhancers	Fetal Brain Male	brain

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