Variant report

Variant	rs7792688
Chromosome Location	chr7:119828331-119828332
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10224017	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10224700	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10224809	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10237275	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10247464	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10250387	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10251877	0.88[ASN][1000 genomes]
rs10252729	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10278455	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1035014	0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs11487122	1.00[EUR][1000 genomes]
rs11768610	0.89[EUR][1000 genomes]
rs12533932	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs12666459	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs12706276	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17142555	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17142585	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17594101	0.99[EUR][1000 genomes]
rs17594220	0.99[EUR][1000 genomes]
rs1860704	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1990429	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2107994	0.88[ASN][1000 genomes]
rs2190183	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2191734	0.83[ASN][1000 genomes]
rs2191736	0.86[CHD][hapmap]
rs2402525	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2402526	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs28532220	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3735339	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3814463	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4730954	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.83[ASN][1000 genomes]
rs4730955	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4730956	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs55963403	1.00[EUR][1000 genomes]
rs56244901	0.99[EUR][1000 genomes]
rs62469500	0.82[EUR][1000 genomes]
rs62469501	0.83[EUR][1000 genomes]
rs62469503	1.00[EUR][1000 genomes]
rs62469505	1.00[EUR][1000 genomes]
rs62469506	0.99[EUR][1000 genomes]
rs62469507	0.99[EUR][1000 genomes]
rs6466735	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6466739	0.88[ASN][1000 genomes]
rs6466740	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs6466741	0.83[ASN][1000 genomes]
rs6943223	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6956408	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6956570	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6956643	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6969916	0.98[EUR][1000 genomes]
rs6973947	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6974349	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6978586	0.98[EUR][1000 genomes]
rs73213448	0.83[EUR][1000 genomes]
rs73213458	0.98[EUR][1000 genomes]
rs7777091	0.83[EUR][1000 genomes]
rs7781529	0.80[EUR][1000 genomes]
rs7782622	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7786492	0.83[EUR][1000 genomes]
rs7790816	0.86[CHD][hapmap]
rs7792980	1.00[CHB][hapmap];0.87[CHD][hapmap]
rs7795487	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7805413	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831113	chr7:119683515-119886277	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv608326	chr7:119828331-119995890	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7792688	CADPS2	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:119826600-119830200	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr7:119827000-119828800	Weak transcription	Aorta	Aorta
3	chr7:119827800-119830800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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