Variant report

Variant	rs7790816
Chromosome Location	chr7:119787707-119787708
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10225178	0.85[EUR][1000 genomes]
rs10254471	0.85[EUR][1000 genomes]
rs10269967	0.82[ASN][1000 genomes]
rs1035014	0.87[CHD][hapmap]
rs11767585	0.95[CEU][hapmap];0.94[TSI][hapmap]
rs12533932	0.87[CHD][hapmap]
rs12666459	0.87[CHD][hapmap]
rs1860704	0.87[CHD][hapmap]
rs2402525	0.87[CHD][hapmap]
rs2402526	0.87[CHD][hapmap]
rs3814463	0.87[CHD][hapmap]
rs4730954	0.87[CHD][hapmap]
rs4730956	0.87[CHD][hapmap]
rs58778277	0.87[EUR][1000 genomes]
rs61273762	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62469497	0.87[EUR][1000 genomes]
rs6961750	0.85[EUR][1000 genomes]
rs7781529	0.82[ASN][1000 genomes]
rs7805413	0.87[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470388	chr7:119464310-119790102	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv831113	chr7:119683515-119886277	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7790816	PTPRZ1	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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