Variant report

Variant	rs10251877
Chromosome Location	chr7:119907168-119907169
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10224017	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10224700	0.88[ASN][1000 genomes]
rs10224809	0.88[ASN][1000 genomes]
rs10237275	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10247464	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10250387	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10252729	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10278455	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10279729	0.94[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1035014	0.83[ASN][1000 genomes]
rs10488287	0.80[ASN][1000 genomes]
rs10953908	0.80[ASN][1000 genomes]
rs12533932	0.91[ASN][1000 genomes]
rs12666459	0.91[ASN][1000 genomes]
rs12706276	0.91[ASN][1000 genomes]
rs12706280	0.80[ASN][1000 genomes]
rs1304206	0.80[ASN][1000 genomes]
rs17142585	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1860704	0.95[ASN][1000 genomes]
rs1990429	0.91[ASN][1000 genomes]
rs2107994	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2190183	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2191734	0.95[ASN][1000 genomes]
rs2191736	0.80[ASN][1000 genomes]
rs2191737	0.80[ASN][1000 genomes]
rs2402525	0.95[ASN][1000 genomes]
rs2402526	0.91[ASN][1000 genomes]
rs2402527	0.80[ASN][1000 genomes]
rs3735339	0.93[ASN][1000 genomes]
rs3814463	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4730954	0.95[ASN][1000 genomes]
rs4730955	0.91[ASN][1000 genomes]
rs4730956	0.91[ASN][1000 genomes]
rs4730958	0.80[ASN][1000 genomes]
rs4730960	0.80[ASN][1000 genomes]
rs60578704	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6466739	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6466740	0.95[ASN][1000 genomes]
rs6466741	0.95[ASN][1000 genomes]
rs6942715	0.80[ASN][1000 genomes]
rs6943223	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6956643	0.88[ASN][1000 genomes]
rs6974349	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7782622	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7792688	0.88[ASN][1000 genomes]
rs7792980	0.90[ASN][1000 genomes]
rs7795487	0.91[ASN][1000 genomes]
rs7801487	0.88[ASN][1000 genomes]
rs7805413	0.90[ASN][1000 genomes]
rs8180795	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608326	chr7:119828331-119995890	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:119898400-119907600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr7:119904200-119912000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr7:119906800-119907800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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