Variant report

Variant	rs6466739
Chromosome Location	chr7:119904541-119904542
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:119900140..119902051-chr7:119902421..119904871,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10224017	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10224700	0.88[ASN][1000 genomes]
rs10224809	0.88[ASN][1000 genomes]
rs10237275	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10241520	0.84[EUR][1000 genomes]
rs10247464	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10250387	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10251877	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10252729	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10278455	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10279729	0.96[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1035014	0.91[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10488287	0.87[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs10953908	0.80[ASN][1000 genomes]
rs12533932	0.92[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs12666459	0.94[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs12706276	0.91[ASN][1000 genomes]
rs12706280	0.80[ASN][1000 genomes]
rs1304206	0.84[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs17142585	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1860704	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1990429	0.94[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2107994	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2190183	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2191734	0.94[AFR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2191736	0.80[ASN][1000 genomes]
rs2191737	0.80[ASN][1000 genomes]
rs2402525	0.94[AFR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2402526	0.94[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2402527	0.80[ASN][1000 genomes]
rs3735339	0.93[ASN][1000 genomes]
rs3814463	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4730954	0.95[ASN][1000 genomes]
rs4730955	0.91[ASN][1000 genomes]
rs4730956	0.94[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs4730958	0.80[ASN][1000 genomes]
rs4730960	0.80[ASN][1000 genomes]
rs60578704	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6466740	0.95[ASN][1000 genomes]
rs6466741	0.94[AFR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6942715	0.84[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs6943223	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6956643	0.88[ASN][1000 genomes]
rs6974349	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7782622	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7792688	0.88[ASN][1000 genomes]
rs7792980	0.90[ASN][1000 genomes]
rs7795487	0.91[ASN][1000 genomes]
rs7801487	0.88[ASN][1000 genomes]
rs7805413	0.94[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs8180795	0.84[AFR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608326	chr7:119828331-119995890	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:119898200-119906600	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr7:119898400-119907600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr7:119904200-119912000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links