Variant report

Variant	rs10224017
Chromosome Location	chr7:119910318-119910319
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10224700	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10224809	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10237275	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10247464	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10250387	0.89[ASN][1000 genomes]
rs10251877	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10252729	0.84[ASN][1000 genomes]
rs10278455	0.84[ASN][1000 genomes]
rs10279729	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1035014	0.86[ASN][1000 genomes]
rs10488287	0.83[ASN][1000 genomes]
rs10953908	0.83[ASN][1000 genomes]
rs11487122	0.95[EUR][1000 genomes]
rs11768610	0.86[EUR][1000 genomes]
rs12533932	0.95[ASN][1000 genomes]
rs12666459	0.95[ASN][1000 genomes]
rs12706276	0.95[ASN][1000 genomes]
rs12706279	0.82[ASN][1000 genomes]
rs12706280	0.83[ASN][1000 genomes]
rs1304206	0.83[ASN][1000 genomes]
rs17142555	0.82[EUR][1000 genomes]
rs17142585	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17594101	0.96[EUR][1000 genomes]
rs17594220	0.96[EUR][1000 genomes]
rs1860704	0.98[ASN][1000 genomes]
rs1990429	0.95[ASN][1000 genomes]
rs2107994	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2190183	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2191734	0.98[ASN][1000 genomes]
rs2191736	0.83[ASN][1000 genomes]
rs2191737	0.83[ASN][1000 genomes]
rs2402525	0.98[ASN][1000 genomes]
rs2402526	0.95[ASN][1000 genomes]
rs2402527	0.83[ASN][1000 genomes]
rs28532220	0.82[EUR][1000 genomes]
rs3735339	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3814463	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4730954	0.98[ASN][1000 genomes]
rs4730955	0.95[ASN][1000 genomes]
rs4730956	0.95[ASN][1000 genomes]
rs4730958	0.83[ASN][1000 genomes]
rs4730960	0.83[ASN][1000 genomes]
rs55963403	0.95[EUR][1000 genomes]
rs56244901	0.96[EUR][1000 genomes]
rs62469503	0.95[EUR][1000 genomes]
rs62469505	0.95[EUR][1000 genomes]
rs62469506	0.96[EUR][1000 genomes]
rs62469507	0.96[EUR][1000 genomes]
rs6466739	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6466740	0.98[ASN][1000 genomes]
rs6466741	0.98[ASN][1000 genomes]
rs6942715	0.83[ASN][1000 genomes]
rs6943223	0.88[ASN][1000 genomes]
rs6956408	0.82[EUR][1000 genomes]
rs6956570	0.82[EUR][1000 genomes]
rs6956643	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6969916	0.94[EUR][1000 genomes]
rs6973947	0.81[EUR][1000 genomes]
rs6974349	0.84[ASN][1000 genomes]
rs6978586	0.95[EUR][1000 genomes]
rs73213458	0.95[EUR][1000 genomes]
rs7782622	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7792688	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7792980	0.93[ASN][1000 genomes]
rs7795487	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7801487	0.91[ASN][1000 genomes]
rs7805413	0.93[ASN][1000 genomes]
rs8180795	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608326	chr7:119828331-119995890	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv1843078	chr7:119909603-119934006	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:119904200-119912000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr7:119908200-119910600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:119908200-119911400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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