Variant report

Variant	rs62469505
Chromosome Location	chr7:119831066-119831067
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10224017	0.95[EUR][1000 genomes]
rs10224700	1.00[EUR][1000 genomes]
rs10224809	1.00[EUR][1000 genomes]
rs11487122	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11760262	0.90[ASN][1000 genomes]
rs11763966	0.90[ASN][1000 genomes]
rs11767260	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11768610	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11773232	0.90[ASN][1000 genomes]
rs11982510	0.90[ASN][1000 genomes]
rs17142555	0.87[EUR][1000 genomes]
rs17374849	0.90[ASN][1000 genomes]
rs17594101	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17594220	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28532220	0.87[EUR][1000 genomes]
rs34850246	0.90[ASN][1000 genomes]
rs3735339	0.99[EUR][1000 genomes]
rs3814463	0.95[EUR][1000 genomes]
rs55680276	0.90[ASN][1000 genomes]
rs55963403	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56244901	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62469500	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62469501	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62469503	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62469506	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62469507	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62470461	0.90[ASN][1000 genomes]
rs62470532	0.90[ASN][1000 genomes]
rs6466735	0.80[EUR][1000 genomes]
rs6466742	0.90[ASN][1000 genomes]
rs6942451	0.88[ASN][1000 genomes]
rs6942755	0.88[ASN][1000 genomes]
rs6956408	0.87[EUR][1000 genomes]
rs6956570	0.86[EUR][1000 genomes]
rs6956643	0.98[EUR][1000 genomes]
rs6969916	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6973947	0.85[EUR][1000 genomes]
rs6978586	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73213448	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73213458	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7777091	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7781529	0.80[EUR][1000 genomes]
rs7786492	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7792688	1.00[EUR][1000 genomes]
rs7795487	0.98[EUR][1000 genomes]
rs7800545	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831113	chr7:119683515-119886277	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv608326	chr7:119828331-119995890	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:119828800-119831200	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr7:119829000-119831200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr7:119829400-119831200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr7:119829800-119831200	Enhancers	H1 Cell Line	embryonic stem cell
5	chr7:119829800-119831200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr7:119830000-119831200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
7	chr7:119830200-119831200	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr7:119830600-119831200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr7:119830800-119831200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
10	chr7:119830800-119831200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr7:119830800-119833600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr7:119831000-119831200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links