Variant report

Variant	rs62469501
Chromosome Location	chr7:119813292-119813293
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:119812455..119815442-chr7:119816683..119818923,3	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10224700	0.83[EUR][1000 genomes]
rs10224809	0.83[EUR][1000 genomes]
rs10269967	0.93[EUR][1000 genomes]
rs11487122	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11760262	0.83[ASN][1000 genomes]
rs11763966	0.83[ASN][1000 genomes]
rs11767260	0.87[ASN][1000 genomes]
rs11768610	0.87[ASN][1000 genomes]
rs11773232	0.83[ASN][1000 genomes]
rs11982510	0.83[ASN][1000 genomes]
rs17142555	0.96[EUR][1000 genomes]
rs17374849	0.83[ASN][1000 genomes]
rs17594101	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17594220	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28532220	0.96[EUR][1000 genomes]
rs34850246	0.83[ASN][1000 genomes]
rs3735339	0.82[EUR][1000 genomes]
rs55680276	0.83[ASN][1000 genomes]
rs55963403	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56244901	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58778277	0.86[ASN][1000 genomes]
rs61273762	0.86[ASN][1000 genomes]
rs62469497	0.86[ASN][1000 genomes]
rs62469500	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62469503	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62469505	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62469506	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62469507	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62470461	0.83[ASN][1000 genomes]
rs62470532	0.83[ASN][1000 genomes]
rs6466735	0.95[EUR][1000 genomes]
rs6466742	0.83[ASN][1000 genomes]
rs6942451	0.81[ASN][1000 genomes]
rs6942755	0.81[ASN][1000 genomes]
rs6956408	0.96[EUR][1000 genomes]
rs6956570	0.95[EUR][1000 genomes]
rs6956643	0.84[EUR][1000 genomes]
rs6969916	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6973947	0.95[EUR][1000 genomes]
rs6978586	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73213448	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73213458	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7777091	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7781529	0.95[EUR][1000 genomes]
rs7786492	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7792688	0.83[EUR][1000 genomes]
rs7795487	0.81[EUR][1000 genomes]
rs7800545	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831113	chr7:119683515-119886277	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv981852	chr7:119811053-119814989	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:119808600-119820600	Weak transcription	NHLF	lung
2	chr7:119811800-119813800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr7:119812000-119813800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr7:119812800-119813600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links