Variant report

Variant	rs3735339
Chromosome Location	chr7:119867139-119867140
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TSPAN12-2	chr7:119867133-119867454	XLOC_006582
2	lnc-TSPAN12-2	chr7:119867133-119867438	XLOC_006582
3	lnc-TSPAN12-2	chr7:119867133-119867233	NONHSAT122992

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10224017	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10224700	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10224809	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10237275	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10247464	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10250387	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10251877	0.93[ASN][1000 genomes]
rs10252729	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10278455	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1035014	0.89[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10488287	0.80[CHB][hapmap];0.80[ASN][1000 genomes]
rs10953908	0.80[CHB][hapmap];0.80[ASN][1000 genomes]
rs11487122	0.99[EUR][1000 genomes]
rs11768610	0.90[EUR][1000 genomes]
rs12533932	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12666459	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12706276	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12706280	0.80[ASN][1000 genomes]
rs1304206	0.80[CHB][hapmap];0.80[ASN][1000 genomes]
rs17142555	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17142585	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17594101	1.00[EUR][1000 genomes]
rs17594220	1.00[EUR][1000 genomes]
rs1860704	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1990429	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2107994	0.93[ASN][1000 genomes]
rs2190183	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2191734	0.88[ASN][1000 genomes]
rs2191736	0.80[ASN][1000 genomes]
rs2191737	0.80[ASN][1000 genomes]
rs2402525	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2402526	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2402527	0.80[ASN][1000 genomes]
rs28532220	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3814463	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4730954	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4730955	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4730956	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4730958	0.80[CHB][hapmap];0.80[ASN][1000 genomes]
rs4730960	0.80[CHB][hapmap];0.80[ASN][1000 genomes]
rs55963403	0.99[EUR][1000 genomes]
rs56244901	1.00[EUR][1000 genomes]
rs62469500	0.81[EUR][1000 genomes]
rs62469501	0.82[EUR][1000 genomes]
rs62469503	0.99[EUR][1000 genomes]
rs62469505	0.99[EUR][1000 genomes]
rs62469506	1.00[EUR][1000 genomes]
rs62469507	1.00[EUR][1000 genomes]
rs6466739	0.93[ASN][1000 genomes]
rs6466740	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs6466741	0.88[ASN][1000 genomes]
rs6942715	0.80[ASN][1000 genomes]
rs6943223	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6956408	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6956570	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6956643	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6969916	0.98[EUR][1000 genomes]
rs6973947	0.85[EUR][1000 genomes]
rs6974349	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6978586	0.99[EUR][1000 genomes]
rs73213448	0.82[EUR][1000 genomes]
rs73213458	0.99[EUR][1000 genomes]
rs7777091	0.82[EUR][1000 genomes]
rs7782622	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7786492	0.82[EUR][1000 genomes]
rs7792688	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7792980	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs7795487	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7801487	0.81[ASN][1000 genomes]
rs7805413	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs8180795	0.80[CHB][hapmap];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831113	chr7:119683515-119886277	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv608326	chr7:119828331-119995890	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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