Variant report

Variant	rs56244901
Chromosome Location	chr7:119838039-119838040
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10224017	0.96[EUR][1000 genomes]
rs10224700	0.99[EUR][1000 genomes]
rs10224809	0.99[EUR][1000 genomes]
rs11487122	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11760262	0.90[ASN][1000 genomes]
rs11763966	0.90[ASN][1000 genomes]
rs11767260	0.96[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11768610	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11773232	0.90[ASN][1000 genomes]
rs11982510	0.90[ASN][1000 genomes]
rs17142555	0.86[EUR][1000 genomes]
rs17374849	0.90[ASN][1000 genomes]
rs17594101	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17594220	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28532220	0.86[EUR][1000 genomes]
rs34850246	0.90[ASN][1000 genomes]
rs3735339	1.00[EUR][1000 genomes]
rs3814463	0.96[EUR][1000 genomes]
rs55680276	0.90[ASN][1000 genomes]
rs55963403	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62469500	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62469501	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62469503	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62469505	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62469506	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62469507	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62470461	0.90[ASN][1000 genomes]
rs62470532	0.90[ASN][1000 genomes]
rs6466742	0.90[ASN][1000 genomes]
rs6942451	0.88[ASN][1000 genomes]
rs6942755	0.88[ASN][1000 genomes]
rs6956408	0.86[EUR][1000 genomes]
rs6956570	0.85[EUR][1000 genomes]
rs6956643	0.98[EUR][1000 genomes]
rs6969916	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6973947	0.85[EUR][1000 genomes]
rs6978586	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73213448	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73213458	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7777091	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7786492	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7792688	0.99[EUR][1000 genomes]
rs7795487	0.99[EUR][1000 genomes]
rs7800545	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831113	chr7:119683515-119886277	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv608326	chr7:119828331-119995890	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:119831200-119842000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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