Variant report

Variant	rs62470461
Chromosome Location	chr7:119917695-119917696
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10488286	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11487122	0.80[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs11760262	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11763966	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11767260	0.95[ASN][1000 genomes]
rs11768610	0.95[ASN][1000 genomes]
rs11769340	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11773232	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11982510	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17374849	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17594101	0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs17594220	0.86[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs34850246	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55680276	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55963403	0.80[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs56244901	0.90[ASN][1000 genomes]
rs62469500	0.83[ASN][1000 genomes]
rs62469501	0.83[ASN][1000 genomes]
rs62469503	0.80[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs62469505	0.90[ASN][1000 genomes]
rs62469506	0.80[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs62469507	0.90[ASN][1000 genomes]
rs62470532	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62470539	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6466742	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6942451	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6942755	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6969916	0.90[ASN][1000 genomes]
rs6978586	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs73213448	0.83[ASN][1000 genomes]
rs73213458	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7777091	0.83[ASN][1000 genomes]
rs7786492	0.83[ASN][1000 genomes]
rs7800545	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608326	chr7:119828331-119995890	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv1843078	chr7:119909603-119934006	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:119914600-119920200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr7:119914600-119921000	Weak transcription	Ovary	ovary
3	chr7:119915600-119919200	Active TSS	Brain Anterior Caudate	brain
4	chr7:119916000-119920000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:119916200-119922400	Active TSS	GM12878-XiMat	blood
6	chr7:119916600-119917800	Active TSS	iPS-20b Cell Line	embryonic stem cell
7	chr7:119917000-119918200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr7:119917600-119917800	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr7:119917600-119919000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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