Variant report

Variant	rs62470539
Chromosome Location	chr7:119974821-119974822
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:119974762..119977078-chr7:119978422..119980782,2	K562	blood:
2	chr7:119974762..119976469-chr7:119978422..119980571,2	K562	blood:
3	chr7:119942149..119944004-chr7:119974588..119977406,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10488286	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10953909	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11487122	0.83[AFR][1000 genomes]
rs11760262	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11763966	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11769340	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11773232	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11982510	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17323760	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17323788	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17374849	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17594101	0.90[AFR][1000 genomes]
rs17594220	0.89[AFR][1000 genomes]
rs34850246	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4140688	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55680276	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55963403	0.83[AFR][1000 genomes]
rs56967206	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62469503	0.83[AFR][1000 genomes]
rs62469506	0.83[AFR][1000 genomes]
rs62470461	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62470532	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62470541	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62470545	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62470547	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62470548	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62470550	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6466742	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6942451	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6942755	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6978586	0.87[AFR][1000 genomes]
rs73213458	0.87[AFR][1000 genomes]
rs736612	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7778213	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7800545	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608326	chr7:119828331-119995890	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:119939400-119995600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:119974600-119975000	ZNF genes & repeats	GM12878-XiMat	blood

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