Variant report

Variant	rs10488286
Chromosome Location	chr7:119974550-119974551
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10239849	0.84[CEU][hapmap]
rs10488289	0.84[CEU][hapmap]
rs10488290	0.84[CEU][hapmap]
rs10488293	0.92[CEU][hapmap]
rs10953909	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10953910	0.81[EUR][1000 genomes]
rs10953911	0.84[CEU][hapmap]
rs11487122	0.87[AFR][1000 genomes]
rs11760262	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11762819	0.82[CEU][hapmap]
rs11763966	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11765076	0.84[CEU][hapmap]
rs11767260	0.82[AFR][1000 genomes]
rs11767585	0.81[ASW][hapmap]
rs11768610	0.82[AFR][1000 genomes]
rs11769050	0.84[CEU][hapmap]
rs11769340	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11769783	0.84[CEU][hapmap];0.80[EUR][1000 genomes]
rs11773232	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11970921	0.80[CEU][hapmap]
rs11972808	0.84[CEU][hapmap]
rs11982510	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17323760	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17323788	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17324055	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs17324341	0.81[EUR][1000 genomes]
rs17324726	0.84[CEU][hapmap]
rs17374849	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17376905	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs17376968	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs17594101	0.94[AFR][1000 genomes]
rs17594220	0.93[AFR][1000 genomes]
rs34850246	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.90[MKK][hapmap];0.95[TSI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4140688	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4730954	0.91[TSI][hapmap]
rs55680276	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55713335	0.81[EUR][1000 genomes]
rs55963403	0.87[AFR][1000 genomes]
rs56967206	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62469503	0.87[AFR][1000 genomes]
rs62469506	0.87[AFR][1000 genomes]
rs62470461	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62470532	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62470539	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62470541	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62470545	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62470547	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62470548	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62470550	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62471537	0.81[EUR][1000 genomes]
rs62471538	0.81[EUR][1000 genomes]
rs62471541	0.81[EUR][1000 genomes]
rs62471542	0.81[EUR][1000 genomes]
rs62471543	0.81[EUR][1000 genomes]
rs62471544	0.81[EUR][1000 genomes]
rs62471550	0.81[EUR][1000 genomes]
rs62471551	0.81[EUR][1000 genomes]
rs62471552	0.81[EUR][1000 genomes]
rs62471553	0.81[EUR][1000 genomes]
rs62471554	0.81[EUR][1000 genomes]
rs62471555	0.81[EUR][1000 genomes]
rs6466742	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6942451	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6942755	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6978586	0.91[AFR][1000 genomes]
rs718805	0.81[EUR][1000 genomes]
rs73213458	0.91[AFR][1000 genomes]
rs73217214	0.81[EUR][1000 genomes]
rs73217220	0.81[EUR][1000 genomes]
rs736612	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7778213	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7794826	0.84[CEU][hapmap]
rs7800545	1.00[ASW][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.91[MEX][hapmap];0.95[MKK][hapmap];0.95[TSI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7809257	0.84[CEU][hapmap]
rs917901	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608326	chr7:119828331-119995890	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:119939400-119995600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:119974400-119974600	Flanking Active TSS	GM12878-XiMat	blood

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