Variant report

Variant	rs4140688
Chromosome Location	chr7:120012475-120012476
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10488286	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10488289	0.89[EUR][1000 genomes]
rs10488290	0.89[EUR][1000 genomes]
rs10488293	0.89[EUR][1000 genomes]
rs10953909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10953910	0.91[EUR][1000 genomes]
rs10953911	0.89[EUR][1000 genomes]
rs11762819	0.89[EUR][1000 genomes]
rs11765076	0.86[EUR][1000 genomes]
rs11769050	0.89[EUR][1000 genomes]
rs11769340	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11769783	0.90[EUR][1000 genomes]
rs11970921	0.89[EUR][1000 genomes]
rs11972808	0.89[EUR][1000 genomes]
rs11982510	0.82[EUR][1000 genomes]
rs17323760	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17323788	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17324055	0.91[EUR][1000 genomes]
rs17324341	0.91[EUR][1000 genomes]
rs17324726	0.89[EUR][1000 genomes]
rs17376905	0.91[EUR][1000 genomes]
rs17376968	0.91[EUR][1000 genomes]
rs34850246	0.82[EUR][1000 genomes]
rs55680276	0.82[EUR][1000 genomes]
rs55708859	0.89[EUR][1000 genomes]
rs55713335	0.91[EUR][1000 genomes]
rs56306813	0.85[EUR][1000 genomes]
rs56354160	0.89[EUR][1000 genomes]
rs56797671	0.89[EUR][1000 genomes]
rs56967206	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60376461	0.89[EUR][1000 genomes]
rs62470532	0.82[EUR][1000 genomes]
rs62470539	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62470541	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62470545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62470547	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62470548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62470550	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62471537	0.91[EUR][1000 genomes]
rs62471538	0.91[EUR][1000 genomes]
rs62471541	0.91[EUR][1000 genomes]
rs62471542	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62471543	0.91[EUR][1000 genomes]
rs62471544	0.91[EUR][1000 genomes]
rs62471545	0.89[EUR][1000 genomes]
rs62471550	0.91[EUR][1000 genomes]
rs62471551	0.91[EUR][1000 genomes]
rs62471552	0.91[EUR][1000 genomes]
rs62471553	0.91[EUR][1000 genomes]
rs62471554	0.91[EUR][1000 genomes]
rs62471555	0.91[EUR][1000 genomes]
rs62471556	0.89[EUR][1000 genomes]
rs62471557	0.89[EUR][1000 genomes]
rs62471559	0.89[EUR][1000 genomes]
rs62472261	0.86[EUR][1000 genomes]
rs62472263	0.89[EUR][1000 genomes]
rs62472264	0.89[EUR][1000 genomes]
rs62472313	0.83[EUR][1000 genomes]
rs62472316	0.89[EUR][1000 genomes]
rs62472317	0.89[EUR][1000 genomes]
rs6466742	0.82[EUR][1000 genomes]
rs6942451	0.82[EUR][1000 genomes]
rs6942755	0.82[EUR][1000 genomes]
rs718805	0.91[EUR][1000 genomes]
rs73217214	0.91[EUR][1000 genomes]
rs73217220	0.91[EUR][1000 genomes]
rs73217223	0.89[EUR][1000 genomes]
rs73217224	0.89[EUR][1000 genomes]
rs736612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7778213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7794826	0.88[EUR][1000 genomes]
rs7800545	0.82[EUR][1000 genomes]
rs7809257	0.89[EUR][1000 genomes]
rs917901	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024920	chr7:120002420-120083753	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120011800-120024400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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