Variant report

Variant	rs62472316
Chromosome Location	chr7:120094851-120094852
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10156047	1.00[ASN][1000 genomes]
rs10156120	1.00[ASN][1000 genomes]
rs10239849	1.00[ASN][1000 genomes]
rs10264724	1.00[ASN][1000 genomes]
rs10277228	1.00[ASN][1000 genomes]
rs10488289	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10488290	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10488293	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10953909	0.86[EUR][1000 genomes]
rs10953910	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10953911	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11762819	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11765060	1.00[ASN][1000 genomes]
rs11765076	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11769050	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11769783	0.96[EUR][1000 genomes]
rs11970921	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11972808	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17323760	0.89[EUR][1000 genomes]
rs17323788	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17324055	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17324341	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17324614	0.87[EUR][1000 genomes]
rs17324726	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17347636	0.90[ASN][1000 genomes]
rs17376905	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17376968	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1861064	1.00[ASN][1000 genomes]
rs4140688	0.89[EUR][1000 genomes]
rs55708859	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55713335	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56306813	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56354160	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56797671	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56967206	0.86[EUR][1000 genomes]
rs60376461	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62470541	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62470545	0.88[EUR][1000 genomes]
rs62470547	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62470548	0.86[EUR][1000 genomes]
rs62470550	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62471537	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62471538	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62471541	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62471542	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62471543	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62471544	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62471545	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62471550	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62471551	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62471552	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62471553	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62471554	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62471555	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62471556	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62471557	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62471559	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62472261	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62472263	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62472264	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62472313	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62472317	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62472320	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6979386	0.82[EUR][1000 genomes]
rs718805	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73217214	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73217220	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73217223	1.00[EUR][1000 genomes]
rs73217224	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73217256	0.90[ASN][1000 genomes]
rs73217291	0.90[ASN][1000 genomes]
rs736612	0.88[EUR][1000 genomes]
rs7778213	0.86[EUR][1000 genomes]
rs7794826	0.99[EUR][1000 genomes]
rs7805931	1.00[ASN][1000 genomes]
rs7809257	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs917901	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516686	chr7:120015843-120223084	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1026821	chr7:120020317-120190437	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120091800-120095200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:120092000-120101200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr7:120093200-120097000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:120093400-120096800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:120093600-120095600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:120093600-120096800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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