Variant report

Variant	rs10156047
Chromosome Location	chr7:120109415-120109416
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1014168	0.82[CEU][hapmap]
rs10156120	1.00[CEU][hapmap];0.90[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10239849	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10264724	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10276390	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs10277228	1.00[CEU][hapmap];0.90[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10488289	1.00[CHB][hapmap]
rs10488291	0.82[CEU][hapmap]
rs10953911	1.00[CHB][hapmap]
rs11762819	1.00[CHB][hapmap]
rs11765060	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11765472	0.82[CEU][hapmap]
rs11767599	0.82[CEU][hapmap]
rs11970921	1.00[CHB][hapmap]
rs11972808	1.00[CHB][hapmap]
rs12531042	0.80[CEU][hapmap];0.85[EUR][1000 genomes]
rs17324726	1.00[CHB][hapmap]
rs17347636	0.90[ASN][1000 genomes]
rs17376905	1.00[CHB][hapmap]
rs1861064	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62472313	1.00[ASN][1000 genomes]
rs62472316	1.00[ASN][1000 genomes]
rs62472317	1.00[ASN][1000 genomes]
rs62472320	1.00[ASN][1000 genomes]
rs6466745	0.82[CEU][hapmap]
rs718805	1.00[CHB][hapmap]
rs73217256	0.90[ASN][1000 genomes]
rs73217291	0.90[ASN][1000 genomes]
rs7785421	0.85[EUR][1000 genomes]
rs7794826	1.00[CHB][hapmap]
rs7805931	1.00[ASN][1000 genomes]
rs7809257	1.00[ASN][1000 genomes]
rs7809573	0.85[EUR][1000 genomes]
rs7810357	0.82[CEU][hapmap]
rs7810837	0.82[CEU][hapmap]
rs917901	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516686	chr7:120015843-120223084	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1026821	chr7:120020317-120190437	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv889116	chr7:120098304-120180671	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120101800-120117000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:120103800-120122400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:120105000-120112600	Weak transcription	GM12878-XiMat	blood
4	chr7:120108400-120109800	Enhancers	Fetal Brain Male	brain

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