Variant report

Variant	rs12531042
Chromosome Location	chr7:120114294-120114295
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 152 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:148)

rs_ID	r²[population]
rs10085878	0.86[CHB][hapmap];0.81[CHD][hapmap]
rs10156047	0.80[CEU][hapmap];0.85[EUR][1000 genomes]
rs10156120	0.80[CEU][hapmap];0.85[EUR][1000 genomes]
rs10230753	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs10233829	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10241131	1.00[CEU][hapmap]
rs10244854	1.00[CEU][hapmap]
rs10245507	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10258480	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs10264481	1.00[CEU][hapmap]
rs10264724	0.80[CEU][hapmap];0.85[EUR][1000 genomes]
rs10265776	0.80[CEU][hapmap]
rs10274789	0.97[ASN][1000 genomes]
rs10275068	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10276390	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10277228	0.80[CEU][hapmap];0.85[EUR][1000 genomes]
rs10278347	0.80[JPT][hapmap]
rs10279267	0.88[ASN][1000 genomes]
rs10279812	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1029976	1.00[CEU][hapmap]
rs1029978	0.97[ASN][1000 genomes]
rs10488291	1.00[CEU][hapmap]
rs10488298	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10488299	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10808192	0.80[CEU][hapmap]
rs10953916	0.80[CEU][hapmap]
rs10953917	0.80[CEU][hapmap]
rs10953918	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11761401	0.97[ASN][1000 genomes]
rs11761549	0.86[CEU][hapmap]
rs11765472	1.00[CEU][hapmap]
rs11767599	1.00[CEU][hapmap]
rs11769563	0.80[CEU][hapmap]
rs11773299	0.83[CEU][hapmap]
rs11980474	0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.84[ASN][1000 genomes]
rs12531146	0.82[JPT][hapmap]
rs12531730	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12536754	0.98[ASN][1000 genomes]
rs12537274	0.81[CHB][hapmap];0.83[CHD][hapmap];0.81[JPT][hapmap]
rs12666810	0.93[ASN][1000 genomes]
rs12706291	0.80[CHB][hapmap]
rs12706292	0.84[CHD][hapmap];0.81[JPT][hapmap]
rs13241174	0.81[JPT][hapmap]
rs1358369	0.81[CHB][hapmap];0.83[CHD][hapmap];0.81[JPT][hapmap]
rs1405835	0.81[JPT][hapmap]
rs1405836	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs1476862	0.80[CEU][hapmap]
rs1527653	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs1569089	0.81[CHB][hapmap]
rs17132703	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1860705	0.83[CEU][hapmap]
rs1861063	0.93[CEU][hapmap]
rs1861064	0.80[CEU][hapmap];0.85[EUR][1000 genomes]
rs1881023	0.86[CHB][hapmap];0.82[CHD][hapmap];0.81[JPT][hapmap]
rs1881024	0.86[CHB][hapmap]
rs1997229	0.86[CHB][hapmap];0.80[JPT][hapmap]
rs2041679	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2041680	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2192374	0.80[CEU][hapmap]
rs2402531	1.00[CEU][hapmap]
rs3814461	0.81[JPT][hapmap]
rs4282509	0.80[CEU][hapmap]
rs4464900	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs4610678	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs4727910	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs4730965	0.80[JPT][hapmap]
rs4730966	0.80[JPT][hapmap]
rs58738977	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59732893	0.97[ASN][1000 genomes]
rs62473168	0.99[ASN][1000 genomes]
rs6466745	1.00[CEU][hapmap]
rs6466746	0.80[CEU][hapmap]
rs6466748	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6466752	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs66473061	0.91[ASN][1000 genomes]
rs66597280	0.93[ASN][1000 genomes]
rs67181710	0.93[ASN][1000 genomes]
rs68060610	0.93[ASN][1000 genomes]
rs6948806	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6950967	0.82[CHB][hapmap];0.83[CHD][hapmap];0.81[JPT][hapmap]
rs6951226	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs6962488	0.80[CEU][hapmap]
rs6966670	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6978175	0.81[JPT][hapmap]
rs6980067	0.80[CEU][hapmap]
rs702414	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs702415	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs702416	0.90[CHB][hapmap];0.82[CHD][hapmap];0.95[JPT][hapmap]
rs723908	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs7785421	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7785571	0.91[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.81[TSI][hapmap];0.88[ASN][1000 genomes]
rs7788666	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7789981	0.80[CEU][hapmap]
rs7790906	0.86[CHB][hapmap];0.83[CHD][hapmap];0.81[JPT][hapmap]
rs7791822	0.81[JPT][hapmap]
rs7791851	0.80[JPT][hapmap]
rs7793037	0.80[CEU][hapmap]
rs7793879	0.80[CEU][hapmap]
rs7793900	1.00[CEU][hapmap]
rs7796685	0.80[CEU][hapmap]
rs7798075	0.93[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7805718	0.80[CEU][hapmap]
rs7808260	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs7809573	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7810837	1.00[CEU][hapmap]
rs7811775	1.00[CEU][hapmap]
rs802332	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs802333	0.95[CHB][hapmap];0.81[CHD][hapmap];0.85[JPT][hapmap]
rs802334	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs802335	0.95[CHB][hapmap];0.89[CHD][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs802336	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs802338	0.88[ASN][1000 genomes]
rs802339	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs802340	0.91[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs802344	0.95[ASN][1000 genomes]
rs802345	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs802346	0.95[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.85[MEX][hapmap];0.84[ASN][1000 genomes]
rs802347	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs802348	0.84[ASN][1000 genomes]
rs802349	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs802350	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs802351	0.84[ASN][1000 genomes]
rs802352	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs802353	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs802354	0.96[ASN][1000 genomes]
rs802355	0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs802356	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs802357	0.95[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs802358	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs802359	1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs802360	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs802362	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs802364	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs802365	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs802367	0.90[CHB][hapmap];0.82[CHD][hapmap];0.95[JPT][hapmap]
rs802370	0.88[ASN][1000 genomes]
rs802371	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs802372	0.90[CHB][hapmap];0.82[CHD][hapmap];0.95[JPT][hapmap]
rs802373	0.88[ASN][1000 genomes]
rs802374	0.95[CHB][hapmap];0.89[CHD][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs802376	0.88[ASN][1000 genomes]
rs802377	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs802378	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs9641639	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9641640	0.90[ASN][1000 genomes]
rs9641642	0.81[JPT][hapmap]
rs9649423	0.85[JPT][hapmap]
rs9942667	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516686	chr7:120015843-120223084	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1026821	chr7:120020317-120190437	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv889116	chr7:120098304-120180671	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv1793998	chr7:120111409-120120322	Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120101800-120117000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:120103800-120122400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:120112400-120120000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr7:120113400-120116800	Enhancers	GM12878-XiMat	blood

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