Variant report

Variant	rs4464900
Chromosome Location	chr7:120244709-120244710
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:120237810..120240402-chr7:120242106..120244739,2	K562	blood:

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs10085878	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10230753	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10233829	0.82[JPT][hapmap]
rs10245507	0.82[JPT][hapmap]
rs10258480	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10276390	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs10278347	1.00[JPT][hapmap]
rs10279812	0.82[JPT][hapmap]
rs10488292	1.00[CEU][hapmap]
rs10488298	1.00[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap];0.88[EUR][1000 genomes]
rs10488299	0.82[JPT][hapmap]
rs10953918	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs11980474	0.81[JPT][hapmap]
rs12530902	1.00[CEU][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap]
rs12531042	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs12531146	0.95[JPT][hapmap]
rs12531689	1.00[CEU][hapmap]
rs12531730	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs12537274	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12666810	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs12673578	1.00[CEU][hapmap]
rs12706290	0.95[JPT][hapmap]
rs12706291	0.83[CHB][hapmap];0.95[JPT][hapmap]
rs12706292	1.00[JPT][hapmap]
rs13224331	0.91[JPT][hapmap]
rs13241174	0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs1358369	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1405835	0.95[JPT][hapmap]
rs1405836	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1527651	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1527652	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1527653	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1527657	0.88[ASN][1000 genomes]
rs1569089	0.95[JPT][hapmap]
rs17132703	0.81[JPT][hapmap]
rs17142724	1.00[CEU][hapmap]
rs17142737	1.00[CEU][hapmap]
rs17142741	1.00[CEU][hapmap]
rs1881023	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1881024	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1918465	0.91[JPT][hapmap]
rs1997229	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2402539	0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs3814461	0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs41391947	1.00[CEU][hapmap]
rs4593467	0.90[ASN][1000 genomes]
rs4610678	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4727910	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs4730963	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4730965	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4730966	0.95[JPT][hapmap]
rs6466752	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66473061	0.88[EUR][1000 genomes]
rs66597280	0.82[EUR][1000 genomes]
rs67181710	0.88[EUR][1000 genomes]
rs68060610	0.88[EUR][1000 genomes]
rs6948806	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs6950967	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs6951226	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6966670	0.82[JPT][hapmap]
rs6978175	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs6979618	0.91[JPT][hapmap]
rs702415	0.83[CHB][hapmap]
rs702416	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs723908	0.83[CHB][hapmap]
rs7781883	1.00[CEU][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7785421	0.82[JPT][hapmap]
rs7790906	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7791822	1.00[JPT][hapmap]
rs7791851	1.00[JPT][hapmap]
rs7798075	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs7808260	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs802332	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs802333	0.86[CHB][hapmap]
rs802334	1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs802335	1.00[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs802336	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs802338	1.00[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs802339	1.00[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs802340	0.87[JPT][hapmap]
rs802345	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs802347	0.82[JPT][hapmap]
rs802355	0.81[JPT][hapmap]
rs802356	0.82[JPT][hapmap]
rs802362	1.00[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs802364	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs802365	1.00[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs802367	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs802370	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs802371	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs802372	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs802373	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs802374	1.00[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs802376	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs802377	1.00[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs802378	1.00[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9641639	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap];0.88[EUR][1000 genomes]
rs9641642	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs9649423	0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889117	chr7:120122040-120266458	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120225600-120249000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:120244000-120245200	Weak transcription	Adipose Nuclei	Adipose
3	chr7:120244600-120245400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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