Variant report

Variant	rs6978175
Chromosome Location	chr7:120238505-120238506
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:120237810..120240402-chr7:120242106..120244739,2	K562	blood:

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10085878	0.91[CHD][hapmap];0.95[JPT][hapmap]
rs10230753	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10233829	0.81[JPT][hapmap];0.92[YRI][hapmap]
rs10245507	0.81[JPT][hapmap]
rs10258480	1.00[JPT][hapmap]
rs10276390	0.81[JPT][hapmap]
rs10278347	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.90[TSI][hapmap]
rs10279812	0.81[JPT][hapmap];0.92[YRI][hapmap]
rs10488298	0.81[JPT][hapmap]
rs10488299	0.81[JPT][hapmap]
rs10953918	0.81[JPT][hapmap];0.92[YRI][hapmap]
rs11980474	0.83[CHD][hapmap];0.81[JPT][hapmap];0.92[YRI][hapmap]
rs12530902	0.95[JPT][hapmap]
rs12531042	0.81[JPT][hapmap]
rs12531146	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12531730	0.81[JPT][hapmap]
rs12537274	0.83[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap]
rs12540785	1.00[CEU][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12706290	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.82[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12706291	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12706292	0.95[CHB][hapmap];0.91[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs13224331	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13227896	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13241174	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1358369	0.83[CHB][hapmap];0.93[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap]
rs1405835	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1405836	1.00[JPT][hapmap]
rs1527653	1.00[JPT][hapmap]
rs1569089	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs17132703	0.81[JPT][hapmap]
rs17142829	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1881023	0.93[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1881024	0.95[JPT][hapmap]
rs1918465	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1997229	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2402539	0.95[JPT][hapmap]
rs3814461	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4464900	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs4610678	1.00[JPT][hapmap]
rs4727909	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4727910	1.00[JPT][hapmap]
rs4730965	0.92[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4730966	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs6466752	1.00[JPT][hapmap]
rs6948806	0.81[JPT][hapmap];0.86[LWK][hapmap];0.92[YRI][hapmap]
rs6950967	0.93[CHD][hapmap];1.00[JPT][hapmap]
rs6951226	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs6966670	0.81[JPT][hapmap];0.92[YRI][hapmap]
rs6979618	0.90[JPT][hapmap]
rs702414	0.91[YRI][hapmap]
rs702415	0.82[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs702416	0.86[ASW][hapmap];0.82[CHB][hapmap];0.89[CHD][hapmap];0.86[JPT][hapmap];0.84[LWK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs7785421	0.81[JPT][hapmap]
rs7785571	0.82[CHB][hapmap];0.81[CHD][hapmap]
rs7790906	0.93[CHD][hapmap];1.00[JPT][hapmap]
rs7791822	0.85[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.90[TSI][hapmap]
rs7791851	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.90[TSI][hapmap]
rs7798075	0.81[JPT][hapmap];0.81[YRI][hapmap]
rs7808260	1.00[JPT][hapmap]
rs802332	0.81[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs802333	0.81[CHB][hapmap];0.93[CHD][hapmap]
rs802334	0.80[CHB][hapmap];0.85[JPT][hapmap]
rs802335	0.86[CHD][hapmap];0.86[JPT][hapmap]
rs802336	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs802337	0.85[AFR][1000 genomes]
rs802339	0.90[JPT][hapmap]
rs802340	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs802345	0.81[JPT][hapmap]
rs802346	0.83[CHD][hapmap];0.86[LWK][hapmap];0.92[YRI][hapmap];0.80[AFR][1000 genomes]
rs802347	0.81[JPT][hapmap]
rs802349	0.81[JPT][hapmap];0.92[YRI][hapmap];0.80[AFR][1000 genomes]
rs802352	0.81[JPT][hapmap]
rs802353	0.81[JPT][hapmap];0.92[YRI][hapmap]
rs802355	0.83[CHD][hapmap];0.81[JPT][hapmap];0.88[LWK][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes]
rs802356	0.81[JPT][hapmap]
rs802358	0.81[JPT][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes]
rs802360	0.81[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs802362	0.86[JPT][hapmap]
rs802363	0.84[AFR][1000 genomes]
rs802364	0.81[CHB][hapmap];0.85[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes]
rs802365	0.86[JPT][hapmap]
rs802367	0.86[ASW][hapmap];0.82[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.86[LWK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs802368	0.87[AFR][1000 genomes]
rs802369	0.88[AFR][1000 genomes]
rs802371	0.82[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs802372	0.86[ASW][hapmap];0.82[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.91[LWK][hapmap];0.80[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs802374	0.86[CHD][hapmap];0.86[JPT][hapmap]
rs802377	0.88[CHD][hapmap];0.86[JPT][hapmap]
rs802378	0.85[JPT][hapmap]
rs9641639	0.82[JPT][hapmap]
rs9641642	0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs9649423	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889117	chr7:120122040-120266458	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120225600-120249000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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