Variant report

Variant	rs12706292
Chromosome Location	chr7:120225074-120225075
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 90 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs10085878	0.83[CHD][hapmap];0.95[JPT][hapmap]
rs10230753	1.00[JPT][hapmap]
rs10233829	0.81[JPT][hapmap]
rs10245507	0.81[JPT][hapmap]
rs10258480	1.00[JPT][hapmap]
rs10276390	0.84[CHD][hapmap];0.81[JPT][hapmap]
rs10278347	0.91[CHB][hapmap];0.91[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap]
rs10279812	0.81[JPT][hapmap]
rs10488298	0.81[JPT][hapmap]
rs10488299	0.81[JPT][hapmap]
rs10953918	0.81[JPT][hapmap]
rs11980474	0.82[CHB][hapmap];0.91[CHD][hapmap];0.81[JPT][hapmap]
rs12530902	0.95[JPT][hapmap]
rs12531042	0.84[CHD][hapmap];0.81[JPT][hapmap]
rs12531146	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12531730	0.84[CHD][hapmap];0.81[JPT][hapmap]
rs12537274	0.85[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap]
rs12540785	0.94[ASN][1000 genomes]
rs12706290	0.95[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs12706291	0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs13224331	0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs13227896	0.93[ASN][1000 genomes]
rs13241174	0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1358369	0.85[CHD][hapmap];1.00[JPT][hapmap]
rs1405835	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1405836	1.00[JPT][hapmap]
rs1527653	1.00[JPT][hapmap]
rs1569089	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs17132703	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs17142829	0.91[ASN][1000 genomes]
rs1881023	0.84[CHD][hapmap];1.00[JPT][hapmap]
rs1881024	0.95[JPT][hapmap]
rs1918465	0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs1997229	1.00[JPT][hapmap]
rs2402539	0.95[JPT][hapmap]
rs3814461	0.91[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4464900	1.00[JPT][hapmap]
rs4610678	1.00[JPT][hapmap]
rs4727909	0.92[ASN][1000 genomes]
rs4727910	1.00[JPT][hapmap]
rs4730965	0.91[CHB][hapmap];0.89[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4730966	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs6466752	1.00[JPT][hapmap]
rs6948806	0.84[CHD][hapmap];0.81[JPT][hapmap]
rs6950967	0.85[CHD][hapmap];1.00[JPT][hapmap]
rs6951226	1.00[JPT][hapmap]
rs6966670	0.81[JPT][hapmap]
rs6978175	0.95[CHB][hapmap];0.91[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs6979618	0.90[JPT][hapmap];0.81[EUR][1000 genomes]
rs702414	0.84[CHB][hapmap]
rs702415	0.81[JPT][hapmap]
rs702416	0.86[JPT][hapmap]
rs723908	0.84[CHD][hapmap]
rs7785421	0.81[JPT][hapmap]
rs7785571	0.86[CHB][hapmap];0.89[CHD][hapmap]
rs7790906	0.85[CHD][hapmap];1.00[JPT][hapmap]
rs7791822	0.86[CHB][hapmap];0.89[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap]
rs7791851	0.91[CHB][hapmap];0.91[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap]
rs7798075	0.82[CHD][hapmap];0.81[JPT][hapmap]
rs7808260	1.00[JPT][hapmap]
rs802332	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs802333	0.84[CHD][hapmap]
rs802334	0.85[JPT][hapmap]
rs802335	0.86[JPT][hapmap]
rs802336	0.86[JPT][hapmap]
rs802339	0.90[JPT][hapmap]
rs802340	0.81[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.91[YRI][hapmap];0.93[AFR][1000 genomes]
rs802345	0.84[CHD][hapmap];0.81[JPT][hapmap]
rs802346	0.82[CHB][hapmap];0.91[CHD][hapmap]
rs802347	0.81[JPT][hapmap]
rs802349	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs802352	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs802353	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs802355	0.82[CHB][hapmap];0.91[CHD][hapmap];0.81[JPT][hapmap]
rs802356	0.81[JPT][hapmap]
rs802358	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs802360	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs802362	0.86[JPT][hapmap]
rs802364	0.85[JPT][hapmap]
rs802365	0.86[JPT][hapmap]
rs802367	0.84[CHD][hapmap];0.86[JPT][hapmap]
rs802371	0.86[JPT][hapmap]
rs802372	0.84[CHD][hapmap];0.86[JPT][hapmap]
rs802374	0.86[JPT][hapmap]
rs802377	0.86[JPT][hapmap]
rs802378	0.85[JPT][hapmap]
rs9641639	0.82[JPT][hapmap]
rs9641642	0.87[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap]
rs9649423	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889117	chr7:120122040-120266458	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12706292	WNT16	cis	cerebellum	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120220200-120227200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:120220800-120225200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr7:120220800-120226000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr7:120223200-120225200	Enhancers	HUVEC	blood vessel
5	chr7:120224400-120225400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr7:120224600-120225200	Enhancers	Muscle Satellite Cultured Cells	--
7	chr7:120224600-120227200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr7:120224600-120228400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr7:120224600-120228600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr7:120224800-120227200	Weak transcription	Hela-S3	cervix
11	chr7:120225000-120225400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr7:120225000-120230000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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