Variant report

Variant	rs723908
Chromosome Location	chr7:120136191-120136192
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:120134846..120137159-chr7:120137881..120139817,2	K562	blood:

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs10085878	0.87[CHB][hapmap];0.81[CHD][hapmap]
rs10230753	0.87[CHB][hapmap]
rs10233829	1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs10245507	1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs10258480	0.87[CHB][hapmap]
rs10274789	0.99[ASN][1000 genomes]
rs10275068	0.98[ASN][1000 genomes]
rs10276390	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs10279267	0.86[ASN][1000 genomes]
rs10279812	1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs1029978	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10488298	0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.90[ASN][1000 genomes]
rs10488299	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10953918	1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[TSI][hapmap];0.97[ASN][1000 genomes]
rs11761401	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11980474	0.95[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs12531042	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs12531730	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12536754	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12537274	0.82[CHB][hapmap];0.83[CHD][hapmap]
rs12666810	0.91[YRI][hapmap];0.89[ASN][1000 genomes]
rs12706291	0.81[CHB][hapmap]
rs12706292	0.84[CHD][hapmap]
rs1358369	0.82[CHB][hapmap];0.83[CHD][hapmap]
rs1405836	0.87[CHB][hapmap]
rs1527653	0.83[CHB][hapmap]
rs1569089	0.81[CHB][hapmap]
rs17132703	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1881023	0.87[CHB][hapmap];0.82[CHD][hapmap]
rs1881024	0.86[CHB][hapmap]
rs1997229	0.87[CHB][hapmap]
rs2041679	0.97[ASN][1000 genomes]
rs2041680	0.97[ASN][1000 genomes]
rs4464900	0.83[CHB][hapmap]
rs4610678	0.83[CHB][hapmap]
rs4727910	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs58738977	0.97[ASN][1000 genomes]
rs59732893	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62473168	0.97[ASN][1000 genomes]
rs6466748	0.98[ASN][1000 genomes]
rs6466752	0.87[CHB][hapmap]
rs66473061	0.91[ASN][1000 genomes]
rs66597280	0.89[ASN][1000 genomes]
rs67181710	0.90[ASN][1000 genomes]
rs68060610	0.89[ASN][1000 genomes]
rs6948806	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.81[TSI][hapmap];0.99[ASN][1000 genomes]
rs6950967	0.83[CHB][hapmap];0.83[CHD][hapmap]
rs6951226	0.87[CHB][hapmap]
rs6966670	1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs6979386	0.82[CEU][hapmap]
rs702414	0.95[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs702415	0.91[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs702416	0.91[CHB][hapmap];0.82[CHD][hapmap];0.91[JPT][hapmap]
rs7785421	1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs7785571	0.91[CHB][hapmap];0.91[CHD][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs7788666	0.97[ASN][1000 genomes]
rs7790906	0.87[CHB][hapmap];0.83[CHD][hapmap]
rs7798075	1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.81[TSI][hapmap];0.98[ASN][1000 genomes]
rs7808260	0.83[CHB][hapmap]
rs7809573	0.97[ASN][1000 genomes]
rs802332	0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs802333	0.95[CHB][hapmap];0.82[CHD][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs802334	0.95[CHB][hapmap];0.90[JPT][hapmap];0.92[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs802335	1.00[ASW][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.91[JPT][hapmap];0.95[LWK][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs802336	0.91[CHB][hapmap];0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs802337	0.81[ASN][1000 genomes]
rs802338	0.81[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs802339	0.95[CHB][hapmap];0.90[JPT][hapmap];0.90[YRI][hapmap];0.92[ASN][1000 genomes]
rs802340	0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs802344	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs802345	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs802346	0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs802347	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs802348	0.88[ASN][1000 genomes]
rs802349	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs802350	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs802351	0.88[ASN][1000 genomes]
rs802352	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs802353	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs802354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs802355	0.95[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs802356	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs802357	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs802358	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs802359	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs802360	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs802362	0.95[CHB][hapmap];0.91[JPT][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs802363	0.80[ASN][1000 genomes]
rs802364	0.90[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs802365	0.95[CHB][hapmap];0.91[JPT][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs802367	0.91[CHB][hapmap];0.82[CHD][hapmap];0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs802369	0.80[ASN][1000 genomes]
rs802370	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs802371	0.91[CHB][hapmap];0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs802372	0.91[CHB][hapmap];0.82[CHD][hapmap];0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs802373	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs802374	1.00[ASW][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.91[JPT][hapmap];0.95[LWK][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs802376	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs802377	1.00[ASW][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.91[JPT][hapmap];0.84[LWK][hapmap];0.91[YRI][hapmap];0.92[ASN][1000 genomes]
rs802378	0.95[CHB][hapmap];0.90[JPT][hapmap];0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9641639	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9641640	0.90[ASN][1000 genomes]
rs9649423	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516686	chr7:120015843-120223084	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1026821	chr7:120020317-120190437	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv889116	chr7:120098304-120180671	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv889117	chr7:120122040-120266458	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120122600-120139400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:120127800-120139400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr7:120127800-120141800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr7:120134600-120136400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr7:120135000-120136400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr7:120135600-120136200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links