Variant report

Variant	rs802364
Chromosome Location	chr7:120160388-120160389
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:120031308..120032856-chr7:120160102..120161912,2	K562	blood:

Extended variants
information (count: 116 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:112)

rs_ID	r²[population]
rs10085878	0.91[CHB][hapmap];0.80[JPT][hapmap]
rs10230753	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs10233829	0.91[CHB][hapmap];0.90[JPT][hapmap];0.89[YRI][hapmap]
rs10245507	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs10258480	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs10274789	0.88[AFR][1000 genomes]
rs10276390	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs10278347	0.85[JPT][hapmap]
rs10279267	0.85[ASN][1000 genomes]
rs10279812	0.91[CHB][hapmap];0.90[JPT][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes]
rs10488298	0.95[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs10488299	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs10953918	0.90[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap];0.84[AFR][1000 genomes]
rs11980474	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.92[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs12531042	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs12531146	0.85[CHB][hapmap];0.82[JPT][hapmap];0.81[AFR][1000 genomes]
rs12531730	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs12537274	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs12540785	0.90[CEU][hapmap]
rs12666810	0.82[ASN][1000 genomes]
rs12706290	0.81[CHB][hapmap];0.80[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12706291	1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap];0.81[AFR][1000 genomes]
rs12706292	0.85[JPT][hapmap]
rs13224331	0.81[CHB][hapmap];0.81[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs13241174	0.85[JPT][hapmap]
rs1358369	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs1405835	0.80[CHB][hapmap];0.85[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes]
rs1405836	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs1527653	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs1569089	1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap];0.84[YRI][hapmap]
rs17132703	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs17142829	0.90[AFR][1000 genomes]
rs1881023	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs1881024	0.90[CHB][hapmap]
rs1918465	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs1997229	0.91[CHB][hapmap];0.80[JPT][hapmap]
rs2041679	0.85[AFR][1000 genomes]
rs2041680	0.85[AFR][1000 genomes]
rs3814461	0.85[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes]
rs4464900	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs4610678	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs4727909	0.90[AFR][1000 genomes]
rs4727910	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs4730965	0.85[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes]
rs4730966	0.85[JPT][hapmap]
rs6466748	0.84[AFR][1000 genomes]
rs6466752	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs66473061	0.84[ASN][1000 genomes]
rs66597280	0.82[ASN][1000 genomes]
rs67181710	0.83[ASN][1000 genomes]
rs68060610	0.82[ASN][1000 genomes]
rs6948806	0.90[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.83[AFR][1000 genomes]
rs6950967	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs6951226	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs6966670	0.91[CHB][hapmap];0.90[JPT][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes]
rs6978175	0.81[CHB][hapmap];0.85[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes]
rs702414	0.95[CHB][hapmap];0.94[JPT][hapmap];0.87[YRI][hapmap];0.90[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs702415	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs702416	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs723908	0.90[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs7785421	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs7785571	0.91[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs7788666	0.84[AFR][1000 genomes]
rs7790906	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs7791822	0.85[JPT][hapmap]
rs7791851	0.85[JPT][hapmap]
rs7798075	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs7808260	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs802332	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs802333	1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[ASN][1000 genomes]
rs802334	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs802335	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs802336	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs802337	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs802338	0.88[ASN][1000 genomes]
rs802339	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs802340	0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs802345	0.90[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs802346	0.95[CHB][hapmap];0.90[JPT][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs802347	0.91[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs802348	0.87[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs802349	0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs802350	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs802351	0.92[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs802352	0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs802353	0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.92[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs802354	0.80[ASN][1000 genomes]
rs802355	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs802356	0.91[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs802357	0.90[CHB][hapmap];0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs802358	0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs802359	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs802360	0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs802362	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs802363	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs802365	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs802366	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs802367	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs802368	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs802369	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs802370	0.88[ASN][1000 genomes]
rs802371	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs802372	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs802373	0.88[ASN][1000 genomes]
rs802374	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs802376	0.88[ASN][1000 genomes]
rs802377	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs802378	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs9641639	1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs9641640	0.83[ASN][1000 genomes]
rs9641642	1.00[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap]
rs9649423	0.81[CHB][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516686	chr7:120015843-120223084	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1026821	chr7:120020317-120190437	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv889116	chr7:120098304-120180671	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv889117	chr7:120122040-120266458	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120152200-120160600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr7:120152200-120162000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:120152800-120160600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr7:120152800-120160600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr7:120159000-120161800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr7:120159400-120162000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr7:120159600-120160400	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr7:120159600-120160600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr7:120159600-120160600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr7:120159600-120160600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr7:120159600-120162000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links