Variant report

Variant	rs10279267
Chromosome Location	chr7:120115518-120115519
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:120109721..120112397-chr7:120114908..120116475,2	K562	blood:
2	chr7:120115063..120116822-chr7:120117642..120119650,2	K562	blood:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10233829	0.88[ASN][1000 genomes]
rs10245507	0.87[ASN][1000 genomes]
rs10274789	0.87[ASN][1000 genomes]
rs10275068	0.88[ASN][1000 genomes]
rs10276390	0.88[ASN][1000 genomes]
rs10279812	0.87[ASN][1000 genomes]
rs1029978	0.87[ASN][1000 genomes]
rs10488298	0.82[ASN][1000 genomes]
rs10488299	0.87[ASN][1000 genomes]
rs10953918	0.87[ASN][1000 genomes]
rs11761401	0.87[ASN][1000 genomes]
rs11980474	0.92[ASN][1000 genomes]
rs12531042	0.88[ASN][1000 genomes]
rs12531730	0.87[ASN][1000 genomes]
rs12536754	0.88[ASN][1000 genomes]
rs12666810	0.82[ASN][1000 genomes]
rs17132703	0.87[ASN][1000 genomes]
rs2041679	0.87[ASN][1000 genomes]
rs2041680	0.87[ASN][1000 genomes]
rs58738977	0.87[ASN][1000 genomes]
rs59732893	0.87[ASN][1000 genomes]
rs62473168	0.88[ASN][1000 genomes]
rs6466748	0.88[ASN][1000 genomes]
rs66473061	0.82[ASN][1000 genomes]
rs66597280	0.82[ASN][1000 genomes]
rs67181710	0.82[ASN][1000 genomes]
rs68060610	0.82[ASN][1000 genomes]
rs6948806	0.87[ASN][1000 genomes]
rs6966670	0.87[ASN][1000 genomes]
rs702414	0.92[ASN][1000 genomes]
rs702415	0.86[ASN][1000 genomes]
rs702416	0.84[ASN][1000 genomes]
rs723908	0.86[ASN][1000 genomes]
rs7785421	0.88[ASN][1000 genomes]
rs7785571	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7788666	0.87[ASN][1000 genomes]
rs7798075	0.88[ASN][1000 genomes]
rs7809573	0.88[ASN][1000 genomes]
rs802332	0.86[ASN][1000 genomes]
rs802333	0.85[ASN][1000 genomes]
rs802336	0.85[ASN][1000 genomes]
rs802337	0.84[ASN][1000 genomes]
rs802340	0.89[ASN][1000 genomes]
rs802344	0.86[ASN][1000 genomes]
rs802345	0.86[ASN][1000 genomes]
rs802346	0.92[ASN][1000 genomes]
rs802347	0.86[ASN][1000 genomes]
rs802348	0.92[ASN][1000 genomes]
rs802349	0.92[ASN][1000 genomes]
rs802350	0.85[ASN][1000 genomes]
rs802351	0.92[ASN][1000 genomes]
rs802352	0.92[ASN][1000 genomes]
rs802353	0.92[ASN][1000 genomes]
rs802354	0.86[ASN][1000 genomes]
rs802355	0.92[ASN][1000 genomes]
rs802356	0.86[ASN][1000 genomes]
rs802357	0.86[ASN][1000 genomes]
rs802358	0.92[ASN][1000 genomes]
rs802359	0.86[ASN][1000 genomes]
rs802360	0.92[ASN][1000 genomes]
rs802363	0.85[ASN][1000 genomes]
rs802364	0.85[ASN][1000 genomes]
rs802367	0.85[ASN][1000 genomes]
rs802368	0.83[ASN][1000 genomes]
rs802369	0.85[ASN][1000 genomes]
rs802371	0.85[ASN][1000 genomes]
rs802372	0.85[ASN][1000 genomes]
rs9641639	0.82[ASN][1000 genomes]
rs9641640	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516686	chr7:120015843-120223084	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1026821	chr7:120020317-120190437	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv889116	chr7:120098304-120180671	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv1793998	chr7:120111409-120120322	Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120101800-120117000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:120103800-120122400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:120112400-120120000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr7:120113400-120116800	Enhancers	GM12878-XiMat	blood

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