Variant report

Variant	rs10953918
Chromosome Location	chr7:120120322-120120323
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 132 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:128)

rs_ID	r²[population]
rs10085878	0.87[CHB][hapmap]
rs10230753	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs10233829	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10241131	0.88[CEU][hapmap]
rs10244854	0.87[CEU][hapmap]
rs10245507	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10258480	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs10264481	0.88[CEU][hapmap]
rs10274789	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10275068	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10276390	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.81[MKK][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10278347	0.81[JPT][hapmap]
rs10279267	0.87[ASN][1000 genomes]
rs10279812	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1029976	0.88[CEU][hapmap]
rs1029978	0.97[ASN][1000 genomes]
rs10488291	0.88[CEU][hapmap]
rs10488298	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10488299	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11761401	0.97[ASN][1000 genomes]
rs11765472	0.88[CEU][hapmap]
rs11767599	0.88[CEU][hapmap]
rs11980474	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.85[MEX][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12531042	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12531146	0.83[JPT][hapmap]
rs12531730	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[TSI][hapmap];1.00[ASN][1000 genomes]
rs12536754	0.99[ASN][1000 genomes]
rs12537274	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs12666810	0.90[ASN][1000 genomes]
rs12706290	0.92[YRI][hapmap]
rs12706291	0.81[CHB][hapmap]
rs12706292	0.81[JPT][hapmap]
rs13224331	0.92[YRI][hapmap]
rs13241174	0.81[JPT][hapmap]
rs1358369	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs1405835	0.81[JPT][hapmap];0.92[YRI][hapmap]
rs1405836	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs1527653	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs1569089	0.81[CHB][hapmap];0.80[JPT][hapmap]
rs17132703	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1861063	0.81[CEU][hapmap]
rs1881023	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs1881024	0.86[CHB][hapmap]
rs1997229	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs2041679	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2041680	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2402531	0.88[CEU][hapmap]
rs3814461	0.81[JPT][hapmap];0.92[YRI][hapmap]
rs4464900	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs4610678	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs4727910	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs4730965	0.81[JPT][hapmap];0.92[YRI][hapmap]
rs4730966	0.81[JPT][hapmap]
rs58738977	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59732893	1.00[ASN][1000 genomes]
rs62473168	0.97[ASN][1000 genomes]
rs6466745	0.88[CEU][hapmap]
rs6466748	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6466752	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs66473061	0.92[ASN][1000 genomes]
rs66597280	0.90[ASN][1000 genomes]
rs67181710	0.91[ASN][1000 genomes]
rs68060610	0.90[ASN][1000 genomes]
rs6948806	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6950967	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs6951226	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs6966670	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6978175	0.81[JPT][hapmap];0.92[YRI][hapmap]
rs702414	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs702415	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes]
rs702416	0.91[CHB][hapmap];0.95[JPT][hapmap];0.91[LWK][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes]
rs723908	1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[TSI][hapmap];0.97[ASN][1000 genomes]
rs7785421	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7785571	0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs7788666	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7790906	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs7791822	0.81[JPT][hapmap]
rs7791851	0.81[JPT][hapmap]
rs7793900	0.88[CEU][hapmap]
rs7798075	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7808260	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs7809573	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7810837	0.88[CEU][hapmap]
rs7811775	0.88[CEU][hapmap]
rs802332	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.82[AFR][1000 genomes]
rs802333	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs802334	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs802335	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs802336	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs802338	0.88[ASN][1000 genomes]
rs802339	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs802340	0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs802344	0.96[ASN][1000 genomes]
rs802345	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[TSI][hapmap];0.97[ASN][1000 genomes]
rs802346	0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[MEX][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs802347	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs802348	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs802349	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs802350	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs802351	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs802352	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs802353	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs802354	0.97[ASN][1000 genomes]
rs802355	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.80[MEX][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs802356	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs802357	0.95[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs802358	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs802359	1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs802360	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs802362	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs802363	0.82[AFR][1000 genomes]
rs802364	0.90[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap];0.84[AFR][1000 genomes]
rs802365	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs802367	0.91[CHB][hapmap];0.95[JPT][hapmap];0.93[LWK][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes]
rs802368	0.83[AFR][1000 genomes]
rs802370	0.88[ASN][1000 genomes]
rs802371	0.91[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap]
rs802372	0.91[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap]
rs802373	0.88[ASN][1000 genomes]
rs802374	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs802376	0.88[ASN][1000 genomes]
rs802377	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs802378	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs9641639	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9641640	0.91[ASN][1000 genomes]
rs9641642	0.81[JPT][hapmap]
rs9649423	0.85[JPT][hapmap];0.92[YRI][hapmap]
rs9942667	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516686	chr7:120015843-120223084	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1026821	chr7:120020317-120190437	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv889116	chr7:120098304-120180671	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv1793998	chr7:120111409-120120322	Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120103800-120122400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:120117400-120126400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:120119200-120126200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr7:120119600-120126200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr7:120119800-120126200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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