Variant report

Variant	rs7790906
Chromosome Location	chr7:120225878-120225879
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs10085878	1.00[ASW][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.92[MEX][hapmap];1.00[MKK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10230753	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10233829	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs10245507	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs10258480	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10276390	0.87[CHB][hapmap];0.83[CHD][hapmap];0.81[JPT][hapmap]
rs10278347	0.93[CHD][hapmap];1.00[JPT][hapmap]
rs10279812	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs10488298	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs10488299	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs10953918	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs11980474	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs12530902	1.00[ASW][hapmap];0.87[CHD][hapmap];0.81[GIH][hapmap];0.95[JPT][hapmap];0.92[LWK][hapmap];0.84[MEX][hapmap];1.00[MKK][hapmap];0.83[TSI][hapmap];0.93[YRI][hapmap]
rs12531042	0.86[CHB][hapmap];0.83[CHD][hapmap];0.81[JPT][hapmap]
rs12531146	0.81[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs12531730	0.87[CHB][hapmap];0.83[CHD][hapmap];0.81[JPT][hapmap]
rs12537274	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.80[MKK][hapmap];0.97[ASN][1000 genomes]
rs12540785	0.82[ASN][1000 genomes]
rs12706290	0.93[CHD][hapmap];0.95[JPT][hapmap]
rs12706291	0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12706292	0.85[CHD][hapmap];1.00[JPT][hapmap]
rs13224331	0.95[JPT][hapmap]
rs13227896	0.80[ASN][1000 genomes]
rs13241174	1.00[JPT][hapmap]
rs1358369	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1405835	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs1405836	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1527651	0.88[ASN][1000 genomes]
rs1527652	0.88[ASN][1000 genomes]
rs1527653	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1527657	0.97[ASN][1000 genomes]
rs1569089	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs17132703	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs1881023	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.84[MEX][hapmap];0.93[MKK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1881024	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.96[LWK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1918465	0.95[JPT][hapmap]
rs1997229	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2402539	0.87[CHD][hapmap];0.95[JPT][hapmap]
rs3814461	1.00[JPT][hapmap]
rs4464900	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4593467	0.82[ASN][1000 genomes]
rs4610678	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4727910	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4730963	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4730965	0.91[CHD][hapmap];1.00[JPT][hapmap]
rs4730966	1.00[JPT][hapmap]
rs6466752	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6948806	0.87[CHB][hapmap];0.83[CHD][hapmap];0.81[JPT][hapmap]
rs6950967	1.00[ASW][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.84[MEX][hapmap];1.00[MKK][hapmap];0.83[TSI][hapmap];0.93[YRI][hapmap]
rs6951226	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6966670	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs6978175	0.93[CHD][hapmap];1.00[JPT][hapmap]
rs6979618	0.90[JPT][hapmap]
rs702414	0.81[CHB][hapmap]
rs702415	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs702416	0.87[CHB][hapmap];0.82[CHD][hapmap];0.86[JPT][hapmap]
rs723908	0.87[CHB][hapmap];0.83[CHD][hapmap]
rs7781883	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7785421	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs7791822	0.91[CHD][hapmap];1.00[JPT][hapmap]
rs7791851	0.93[CHD][hapmap];1.00[JPT][hapmap]
rs7798075	0.87[CHB][hapmap];0.80[CHD][hapmap];0.81[JPT][hapmap]
rs7808260	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs802332	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs802333	0.91[CHB][hapmap];0.87[CHD][hapmap]
rs802334	0.90[CHB][hapmap];0.85[JPT][hapmap];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs802335	0.91[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.84[MEX][hapmap];0.81[MKK][hapmap];0.83[TSI][hapmap];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs802336	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs802338	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs802339	0.91[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs802340	0.91[JPT][hapmap]
rs802345	0.87[CHB][hapmap];0.83[CHD][hapmap];0.81[JPT][hapmap]
rs802346	0.83[CHB][hapmap]
rs802347	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs802349	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs802350	0.86[CHB][hapmap]
rs802352	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs802353	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs802355	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs802356	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs802357	0.82[CHB][hapmap]
rs802358	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs802359	0.87[CHB][hapmap]
rs802360	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs802362	0.91[CHB][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs802364	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs802365	0.91[CHB][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs802367	0.87[CHB][hapmap];0.87[CHD][hapmap];0.86[JPT][hapmap]
rs802370	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs802371	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs802372	0.87[CHB][hapmap];0.87[CHD][hapmap];0.86[JPT][hapmap]
rs802373	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs802374	0.91[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.84[MEX][hapmap];0.81[MKK][hapmap];0.83[TSI][hapmap];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs802376	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs802377	0.91[CHB][hapmap];0.95[CHD][hapmap];0.86[JPT][hapmap];0.84[MEX][hapmap];0.81[MKK][hapmap];0.83[TSI][hapmap];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs802378	0.90[CHB][hapmap];0.85[JPT][hapmap];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9641639	0.89[CHB][hapmap];0.82[JPT][hapmap]
rs9641642	0.93[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap]
rs9649423	1.00[JPT][hapmap];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889117	chr7:120122040-120266458	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120220200-120227200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:120220800-120226000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr7:120224600-120227200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr7:120224600-120228400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr7:120224600-120228600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:120224800-120227200	Weak transcription	Hela-S3	cervix
7	chr7:120225000-120230000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr7:120225200-120228600	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr7:120225200-120229800	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr7:120225600-120249000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr7:120225800-120228600	Weak transcription	HUVEC	blood vessel

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