Variant report

Variant	rs12530902
Chromosome Location	chr7:120266458-120266459
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:120264933..120266769-chr7:120268745..120271169,2	K562	blood:
2	chr7:120260960..120263312-chr7:120264903..120266573,2	K562	blood:

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10085878	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[CHD][hapmap];0.81[GIH][hapmap];0.91[JPT][hapmap];0.92[LWK][hapmap];0.92[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10230753	1.00[CEU][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10258480	1.00[CEU][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10278347	0.95[JPT][hapmap]
rs10488298	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs12531146	0.94[JPT][hapmap]
rs12537274	0.87[CHD][hapmap];0.95[JPT][hapmap];0.80[MKK][hapmap]
rs12666810	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs12706290	0.91[JPT][hapmap]
rs12706291	0.95[JPT][hapmap]
rs12706292	0.95[JPT][hapmap]
rs13224331	0.91[JPT][hapmap]
rs13241174	0.95[JPT][hapmap]
rs1358369	0.87[CHD][hapmap];0.95[JPT][hapmap]
rs1405835	0.95[JPT][hapmap]
rs1405836	1.00[CEU][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1527651	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1527652	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1527653	0.95[JPT][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1569089	0.95[JPT][hapmap]
rs17142724	1.00[CEU][hapmap]
rs17142737	1.00[CEU][hapmap]
rs17142741	1.00[CEU][hapmap]
rs1881023	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHD][hapmap];0.81[GIH][hapmap];0.95[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1881024	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[GIH][hapmap];0.95[JPT][hapmap];0.88[LWK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1918465	0.91[JPT][hapmap]
rs1997229	1.00[CEU][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2402539	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs3814461	0.95[JPT][hapmap]
rs41391947	1.00[CEU][hapmap]
rs4464900	1.00[CEU][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4610678	1.00[CEU][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4727910	1.00[CEU][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap]
rs4730963	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4730965	0.95[JPT][hapmap]
rs4730966	0.95[JPT][hapmap]
rs6466752	1.00[CEU][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs66473061	0.88[EUR][1000 genomes]
rs66597280	0.82[EUR][1000 genomes]
rs67181710	0.88[EUR][1000 genomes]
rs68060610	0.88[EUR][1000 genomes]
rs6950967	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs6951226	1.00[CEU][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6978175	0.95[JPT][hapmap]
rs6979618	0.95[JPT][hapmap]
rs702416	0.81[JPT][hapmap]
rs7781883	1.00[CEU][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7790906	1.00[ASW][hapmap];0.87[CHD][hapmap];0.81[GIH][hapmap];0.95[JPT][hapmap];0.92[LWK][hapmap];0.84[MEX][hapmap];1.00[MKK][hapmap];0.83[TSI][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7791822	0.95[JPT][hapmap]
rs7791851	0.95[JPT][hapmap]
rs7808260	1.00[CEU][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs802332	0.80[JPT][hapmap]
rs802333	0.83[TSI][hapmap]
rs802334	1.00[CEU][hapmap];0.80[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs802335	1.00[CEU][hapmap];0.81[JPT][hapmap];0.83[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs802336	0.81[JPT][hapmap]
rs802338	1.00[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs802339	1.00[CEU][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs802340	0.85[JPT][hapmap]
rs802362	1.00[CEU][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs802365	1.00[CEU][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs802367	0.81[JPT][hapmap]
rs802370	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs802371	0.81[JPT][hapmap]
rs802372	0.81[JPT][hapmap]
rs802373	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs802374	1.00[CEU][hapmap];0.81[JPT][hapmap];0.83[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs802376	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs802377	1.00[CEU][hapmap];0.81[CHD][hapmap];0.81[JPT][hapmap];0.83[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs802378	1.00[CEU][hapmap];0.80[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9641639	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs9641642	0.95[JPT][hapmap]
rs9649423	0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889117	chr7:120122040-120266458	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links