Variant report

Variant	rs802378
Chromosome Location	chr7:120179545-120179546
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:120173889..120175892-chr7:120179187..120180954,2	K562	blood:

Extended variants
information (count: 134 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:130)

rs_ID	r²[population]
rs10085878	1.00[CEU][hapmap];0.90[CHB][hapmap];0.80[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10230753	1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10233829	0.87[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs10245507	0.87[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs10258480	1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10274789	0.91[ASN][1000 genomes]
rs10275068	0.90[ASN][1000 genomes]
rs10276390	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs10278347	0.85[JPT][hapmap]
rs10279812	0.87[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs1029978	0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs10488292	1.00[CEU][hapmap]
rs10488298	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10488299	0.87[CHB][hapmap];0.95[JPT][hapmap];0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs10953918	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs11761401	0.91[ASN][1000 genomes]
rs11980474	0.90[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs12530902	1.00[CEU][hapmap];0.80[JPT][hapmap]
rs12531042	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs12531689	1.00[CEU][hapmap]
rs12531730	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs12536754	0.90[ASN][1000 genomes]
rs12537274	0.85[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs12666810	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12672579	1.00[CEU][hapmap]
rs12673578	1.00[CEU][hapmap]
rs12706290	0.80[JPT][hapmap]
rs12706291	0.81[CHB][hapmap]
rs12706292	0.85[JPT][hapmap]
rs13241174	0.80[JPT][hapmap]
rs1358369	0.85[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs1405835	0.80[JPT][hapmap]
rs1405836	1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1527651	1.00[EUR][1000 genomes]
rs1527652	1.00[EUR][1000 genomes]
rs1527653	0.81[CHB][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1527657	0.84[ASN][1000 genomes]
rs1569089	0.80[JPT][hapmap]
rs17132703	0.86[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs17142666	1.00[CEU][hapmap]
rs17142724	1.00[CEU][hapmap]
rs17142737	1.00[CEU][hapmap]
rs17142741	1.00[CEU][hapmap]
rs1881023	1.00[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1881024	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1997229	1.00[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2041679	0.88[ASN][1000 genomes]
rs2041680	0.88[ASN][1000 genomes]
rs2402539	0.80[JPT][hapmap]
rs3814461	0.80[JPT][hapmap]
rs41391947	1.00[CEU][hapmap]
rs4464900	1.00[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4610678	1.00[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap];1.00[EUR][1000 genomes]
rs4727910	1.00[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap]
rs4730963	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4730965	0.85[JPT][hapmap]
rs4730966	0.80[JPT][hapmap]
rs58738977	0.88[ASN][1000 genomes]
rs59732893	0.80[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs62473168	0.88[ASN][1000 genomes]
rs6466748	0.90[ASN][1000 genomes]
rs6466752	1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs66473061	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66597280	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67181710	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs68060610	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6948806	0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs6950967	1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap]
rs6951226	1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6966670	0.87[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs6978175	0.85[JPT][hapmap]
rs702414	0.80[CHB][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs702415	0.91[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs702416	0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs723908	0.95[CHB][hapmap];0.90[JPT][hapmap];0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7781883	1.00[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7785421	0.87[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs7785571	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs7788666	0.88[ASN][1000 genomes]
rs7790906	0.90[CHB][hapmap];0.85[JPT][hapmap];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7791822	0.85[JPT][hapmap]
rs7791851	0.85[JPT][hapmap]
rs7798075	0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs7808260	1.00[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7809573	0.88[ASN][1000 genomes]
rs802332	0.95[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs802333	1.00[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs802334	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs802335	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs802336	0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs802337	0.89[ASN][1000 genomes]
rs802338	1.00[CEU][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs802339	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs802340	0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs802344	0.84[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs802345	0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs802346	0.90[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs802347	0.87[CHB][hapmap];0.95[JPT][hapmap];0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs802348	0.81[ASN][1000 genomes]
rs802349	0.83[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs802350	0.86[CHB][hapmap];0.94[JPT][hapmap];0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs802351	0.81[ASN][1000 genomes]
rs802352	0.83[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs802353	0.83[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs802354	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs802355	0.90[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs802356	0.87[CHB][hapmap];0.95[JPT][hapmap];0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs802357	0.90[CHB][hapmap];0.89[JPT][hapmap];0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs802358	0.83[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs802359	0.87[CHB][hapmap];0.91[JPT][hapmap];0.86[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs802360	0.83[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs802362	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs802363	0.88[ASN][1000 genomes]
rs802364	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs802365	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs802366	0.82[ASN][1000 genomes]
rs802367	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs802368	0.87[ASN][1000 genomes]
rs802369	0.88[ASN][1000 genomes]
rs802370	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs802371	0.91[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs802372	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs802373	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs802374	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs802376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs802377	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9641639	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9641640	0.94[ASN][1000 genomes]
rs9641642	0.85[JPT][hapmap]
rs9649423	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516686	chr7:120015843-120223084	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1026821	chr7:120020317-120190437	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv889116	chr7:120098304-120180671	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv889117	chr7:120122040-120266458	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120162400-120180600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:120179200-120179600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:120179200-120179600	Enhancers	Adipose Nuclei	Adipose
4	chr7:120179200-120179800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr7:120179400-120179600	Enhancers	H1 Cell Line	embryonic stem cell

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