Variant report

Variant	rs9641639
Chromosome Location	chr7:120116444-120116445
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:120109721..120112397-chr7:120114908..120116475,2	K562	blood:
2	chr7:120115063..120116822-chr7:120117642..120119650,2	K562	blood:
3	chr7:120115577..120117354-chr7:120124597..120127119,2	MCF-7	breast:

Extended variants
information (count: 127 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs10085878	1.00[CEU][hapmap];0.89[CHB][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10230753	1.00[CEU][hapmap];0.90[CHB][hapmap];0.83[JPT][hapmap];0.88[EUR][1000 genomes]
rs10233829	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10245507	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10258480	1.00[CEU][hapmap];0.90[CHB][hapmap];0.83[JPT][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10274789	0.92[ASN][1000 genomes]
rs10275068	0.93[ASN][1000 genomes]
rs10276390	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10278347	0.82[JPT][hapmap]
rs10279267	0.82[ASN][1000 genomes]
rs10279812	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1029978	0.92[ASN][1000 genomes]
rs10488292	1.00[CEU][hapmap]
rs10488298	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10488299	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10953918	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11761401	0.92[ASN][1000 genomes]
rs11980474	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs12530902	1.00[CEU][hapmap]
rs12531042	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12531146	0.83[CHB][hapmap]
rs12531689	1.00[CEU][hapmap]
rs12531730	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12536754	0.93[ASN][1000 genomes]
rs12537274	0.83[CHB][hapmap];0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs12666810	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12672579	1.00[CEU][hapmap]
rs12673578	1.00[CEU][hapmap]
rs12706291	0.84[CHB][hapmap]
rs12706292	0.82[JPT][hapmap]
rs1358369	0.83[CHB][hapmap];0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs1405836	1.00[CEU][hapmap];0.90[CHB][hapmap];0.83[JPT][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1527651	0.88[EUR][1000 genomes]
rs1527652	0.88[EUR][1000 genomes]
rs1527653	0.85[CHB][hapmap];0.83[JPT][hapmap];0.88[EUR][1000 genomes]
rs1569089	0.84[CHB][hapmap]
rs17132703	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs17142666	1.00[CEU][hapmap]
rs17142724	1.00[CEU][hapmap]
rs17142737	1.00[CEU][hapmap]
rs17142741	1.00[CEU][hapmap]
rs1881023	1.00[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.88[EUR][1000 genomes]
rs1881024	1.00[CEU][hapmap];0.89[CHB][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1997229	1.00[CEU][hapmap];0.90[CHB][hapmap];0.83[JPT][hapmap];0.88[EUR][1000 genomes]
rs2041679	0.92[ASN][1000 genomes]
rs2041680	0.92[ASN][1000 genomes]
rs41391947	1.00[CEU][hapmap]
rs4464900	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap];0.88[EUR][1000 genomes]
rs4610678	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap];0.88[EUR][1000 genomes]
rs4727910	1.00[CEU][hapmap];0.90[CHB][hapmap];0.83[JPT][hapmap]
rs4730963	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4730965	0.82[JPT][hapmap]
rs58738977	0.92[ASN][1000 genomes]
rs59732893	0.80[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs62473168	0.92[ASN][1000 genomes]
rs6466748	0.93[ASN][1000 genomes]
rs6466752	1.00[CEU][hapmap];0.90[CHB][hapmap];0.83[JPT][hapmap];0.88[EUR][1000 genomes]
rs66473061	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66597280	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67181710	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs68060610	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6948806	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6950967	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[JPT][hapmap]
rs6951226	1.00[CEU][hapmap];0.90[CHB][hapmap];0.83[JPT][hapmap];0.88[EUR][1000 genomes]
rs6966670	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6978175	0.82[JPT][hapmap]
rs702414	0.94[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs702415	1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs702416	1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs723908	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7781883	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs7785421	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7785571	0.94[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs7788666	0.92[ASN][1000 genomes]
rs7790906	0.89[CHB][hapmap];0.82[JPT][hapmap]
rs7791822	0.82[JPT][hapmap]
rs7791851	0.82[JPT][hapmap]
rs7798075	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7808260	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap];0.88[EUR][1000 genomes]
rs7809573	0.92[ASN][1000 genomes]
rs802332	1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs802333	1.00[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs802334	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs802335	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs802336	1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs802337	0.84[ASN][1000 genomes]
rs802338	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs802339	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs802340	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs802344	0.91[ASN][1000 genomes]
rs802345	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs802346	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs802347	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs802348	0.80[ASN][1000 genomes]
rs802349	0.95[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs802350	0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs802351	0.80[ASN][1000 genomes]
rs802352	0.95[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs802353	0.95[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs802354	0.91[ASN][1000 genomes]
rs802355	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs802356	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs802357	0.94[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs802358	0.95[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs802359	0.95[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs802360	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs802362	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs802363	0.84[ASN][1000 genomes]
rs802364	1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs802365	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs802367	1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs802368	0.82[ASN][1000 genomes]
rs802369	0.84[ASN][1000 genomes]
rs802370	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs802371	1.00[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs802372	1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs802373	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs802374	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs802376	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs802377	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs802378	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9641640	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9641642	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516686	chr7:120015843-120223084	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1026821	chr7:120020317-120190437	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv889116	chr7:120098304-120180671	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv1793998	chr7:120111409-120120322	Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120101800-120117000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:120103800-120122400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:120112400-120120000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr7:120113400-120116800	Enhancers	GM12878-XiMat	blood
5	chr7:120115800-120116800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr7:120116200-120117200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr7:120116200-120117400	Enhancers	HUES6 Cell Line	embryonic stem cell

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