Variant report

Variant	rs10488299
Chromosome Location	chr7:120132056-120132057
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 126 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:122)

rs_ID	r²[population]
rs10085878	0.87[CHB][hapmap]
rs10230753	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs10233829	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10245507	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10258480	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs10265776	0.86[CEU][hapmap]
rs10274789	1.00[ASN][1000 genomes]
rs10275068	0.99[ASN][1000 genomes]
rs10276390	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10278347	0.81[JPT][hapmap]
rs10279267	0.87[ASN][1000 genomes]
rs10279812	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1029978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10488298	0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.91[ASN][1000 genomes]
rs10808192	0.87[CEU][hapmap]
rs10953916	0.86[CEU][hapmap]
rs10953917	0.87[CEU][hapmap]
rs10953918	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11761401	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11761549	0.87[CEU][hapmap]
rs11769563	0.87[CEU][hapmap]
rs11980474	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12531042	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12531730	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12536754	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12537274	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs12666810	0.91[YRI][hapmap];0.90[ASN][1000 genomes]
rs12706292	0.81[JPT][hapmap]
rs1358369	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs1405836	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs1476862	0.87[CEU][hapmap]
rs1527653	0.82[JPT][hapmap]
rs17132703	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1881023	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs1881024	0.86[CHB][hapmap]
rs1997229	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs2041679	0.97[ASN][1000 genomes]
rs2041680	0.97[ASN][1000 genomes]
rs2192374	0.87[CEU][hapmap]
rs4282509	0.86[CEU][hapmap]
rs4464900	0.82[JPT][hapmap]
rs4610678	0.81[JPT][hapmap]
rs4727910	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs4730965	0.81[JPT][hapmap]
rs58738977	0.97[ASN][1000 genomes]
rs59732893	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62473168	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6466746	0.86[CEU][hapmap]
rs6466748	0.99[ASN][1000 genomes]
rs6466752	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs66473061	0.92[ASN][1000 genomes]
rs66597280	0.90[ASN][1000 genomes]
rs67181710	0.91[ASN][1000 genomes]
rs68060610	0.90[ASN][1000 genomes]
rs6948806	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6950967	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs6951226	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs6962488	0.87[CEU][hapmap]
rs6966670	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6978175	0.81[JPT][hapmap]
rs6979386	0.92[CEU][hapmap]
rs6980067	0.86[CEU][hapmap]
rs702414	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs702415	0.87[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs702416	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs723908	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7785421	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7785571	0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs7788666	0.97[ASN][1000 genomes]
rs7789981	0.86[CEU][hapmap]
rs7790906	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs7791822	0.81[JPT][hapmap]
rs7791851	0.81[JPT][hapmap]
rs7793037	0.87[CEU][hapmap]
rs7793879	0.87[CEU][hapmap]
rs7796685	0.86[CEU][hapmap]
rs7798075	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7805718	0.86[CEU][hapmap]
rs7808260	0.82[JPT][hapmap]
rs7809573	0.97[ASN][1000 genomes]
rs802332	0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs802333	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs802334	0.91[CHB][hapmap];0.95[JPT][hapmap];0.89[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs802335	0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.89[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs802336	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs802337	0.80[ASN][1000 genomes]
rs802338	0.91[ASN][1000 genomes]
rs802339	0.91[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.91[ASN][1000 genomes]
rs802340	0.92[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs802344	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs802345	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs802346	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs802347	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs802348	0.88[ASN][1000 genomes]
rs802349	0.96[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs802350	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs802351	0.88[ASN][1000 genomes]
rs802352	0.96[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs802353	0.96[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs802354	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs802355	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs802356	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs802357	0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs802358	0.96[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs802359	0.86[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs802360	0.96[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs802362	0.92[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs802364	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs802365	0.92[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.89[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs802367	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs802370	0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs802371	0.87[CHB][hapmap];0.91[JPT][hapmap]
rs802372	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs802373	0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs802374	0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs802376	0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs802377	0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.91[ASN][1000 genomes]
rs802378	0.87[CHB][hapmap];0.95[JPT][hapmap];0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs9641639	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9641640	0.91[ASN][1000 genomes]
rs9641642	0.81[JPT][hapmap]
rs9649423	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516686	chr7:120015843-120223084	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1026821	chr7:120020317-120190437	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv889116	chr7:120098304-120180671	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv889117	chr7:120122040-120266458	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120122600-120139400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:120127800-120139400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr7:120127800-120141800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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