Variant report

Variant	rs6979386
Chromosome Location	chr7:120056246-120056247
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 112 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:109)

rs_ID	r²[population]
rs10216253	0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10225134	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10232879	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10236303	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10241131	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10244854	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10264481	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10265776	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1029976	1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10488289	0.82[EUR][1000 genomes]
rs10488290	0.82[EUR][1000 genomes]
rs10488291	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10488292	0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10488293	0.82[EUR][1000 genomes]
rs10488299	0.92[CEU][hapmap]
rs10808192	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10953911	0.82[EUR][1000 genomes]
rs10953913	0.90[ASN][1000 genomes]
rs10953914	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10953915	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10953916	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10953917	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11761549	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11762819	0.82[EUR][1000 genomes]
rs11763043	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11764191	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11765472	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11767599	1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11769050	0.82[EUR][1000 genomes]
rs11769563	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11773299	0.94[CHB][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11970921	0.82[EUR][1000 genomes]
rs11972808	0.82[EUR][1000 genomes]
rs11973307	0.88[ASN][1000 genomes]
rs12531000	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12531689	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12531730	0.91[CEU][hapmap]
rs12538872	0.89[ASN][1000 genomes]
rs12672579	0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12673578	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12674267	0.86[ASN][1000 genomes]
rs1476862	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17132703	0.91[CEU][hapmap]
rs17142724	0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17142737	0.90[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs17142741	0.90[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs17324726	0.82[EUR][1000 genomes]
rs1860705	0.94[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1861062	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1861063	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2192374	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2402530	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2402531	1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs28855094	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs41391947	0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs4282509	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4534083	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55708859	0.82[EUR][1000 genomes]
rs56354160	0.82[EUR][1000 genomes]
rs56797671	0.82[EUR][1000 genomes]
rs60376461	0.82[EUR][1000 genomes]
rs62471556	0.82[EUR][1000 genomes]
rs62471557	0.82[EUR][1000 genomes]
rs62471559	0.82[EUR][1000 genomes]
rs62472263	0.82[EUR][1000 genomes]
rs62472264	0.82[EUR][1000 genomes]
rs62472316	0.82[EUR][1000 genomes]
rs62472317	0.82[EUR][1000 genomes]
rs6466745	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6466746	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66843006	0.89[ASN][1000 genomes]
rs66977230	0.89[ASN][1000 genomes]
rs67159775	0.90[ASN][1000 genomes]
rs67430445	0.90[ASN][1000 genomes]
rs67436527	0.89[ASN][1000 genomes]
rs67560031	0.89[ASN][1000 genomes]
rs68038367	0.89[ASN][1000 genomes]
rs68153227	0.90[ASN][1000 genomes]
rs6943313	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6955059	0.91[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6962488	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6965138	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6978518	0.95[CHB][hapmap];0.86[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6980067	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs723908	0.82[CEU][hapmap]
rs72603599	0.90[ASN][1000 genomes]
rs72603600	0.90[ASN][1000 genomes]
rs73217223	0.82[EUR][1000 genomes]
rs73217224	0.82[EUR][1000 genomes]
rs7776942	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7789981	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs7793037	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7793195	1.00[CHB][hapmap];0.93[JPT][hapmap];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7793879	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7793900	1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7794826	0.81[EUR][1000 genomes]
rs7796685	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7798870	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7805718	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7809257	0.82[EUR][1000 genomes]
rs7810837	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7811775	0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs802345	0.82[CEU][hapmap]
rs802347	0.83[CEU][hapmap]
rs802350	0.83[CEU][hapmap]
rs802356	0.83[CEU][hapmap]
rs802359	0.83[CEU][hapmap]
rs917901	0.82[EUR][1000 genomes]
rs9942667	1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024920	chr7:120002420-120083753	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv516686	chr7:120015843-120223084	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1026821	chr7:120020317-120190437	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120043200-120075000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:120054600-120056600	ZNF genes & repeats	GM12878-XiMat	blood

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