Variant report

Variant	rs1861063
Chromosome Location	chr7:120104076-120104077
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10216253	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs10225134	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs10232879	1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes]
rs10233829	0.82[CEU][hapmap]
rs10236303	0.82[AMR][1000 genomes]
rs10241131	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs10244854	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10245507	0.82[CEU][hapmap]
rs10264481	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs10265776	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10276390	0.94[CEU][hapmap]
rs10279812	0.82[CEU][hapmap]
rs1029976	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10488291	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs10488292	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs10808192	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10953914	0.82[ASN][1000 genomes]
rs10953915	0.82[ASN][1000 genomes]
rs10953916	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10953917	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10953918	0.81[CEU][hapmap]
rs11761549	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11763043	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11764191	0.82[ASN][1000 genomes]
rs11765472	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs11767599	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11769563	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs11773299	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs12531000	0.82[ASN][1000 genomes]
rs12531042	0.93[CEU][hapmap]
rs12531689	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs12672579	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs12673578	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs1476862	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs17142724	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs17142737	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs17142741	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs1860705	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs1861062	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2192374	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2402530	0.82[ASN][1000 genomes]
rs2402531	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs28855094	0.82[ASN][1000 genomes]
rs41391947	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4282509	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs4534083	0.81[ASN][1000 genomes]
rs6466745	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs6466746	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6943313	0.82[ASN][1000 genomes]
rs6948806	0.81[CEU][hapmap]
rs6955059	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6962488	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6965138	0.82[ASN][1000 genomes]
rs6966670	0.82[CEU][hapmap]
rs6978518	0.95[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6979386	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs6980067	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7776942	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7785421	0.94[CEU][hapmap]
rs7789981	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7793037	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7793195	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7793879	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7793900	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7796685	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7798075	0.81[CEU][hapmap]
rs7798870	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7805718	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7810837	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs7811775	0.94[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9942667	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516686	chr7:120015843-120223084	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1026821	chr7:120020317-120190437	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv889116	chr7:120098304-120180671	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120101800-120117000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:120103000-120104400	Enhancers	Muscle Satellite Cultured Cells	--
3	chr7:120103800-120108600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr7:120103800-120122400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:120104000-120104600	Enhancers	Brain Germinal Matrix	brain

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