Variant report

Variant	rs1860705
Chromosome Location	chr7:120056669-120056670
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs1014168	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs10216253	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10225134	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10232879	0.90[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10236303	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10241131	0.84[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10244854	0.83[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10264481	0.83[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap]
rs10265776	0.91[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap];0.81[TSI][hapmap];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10276390	0.84[CEU][hapmap]
rs1029976	0.84[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10488291	0.84[CEU][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.92[TSI][hapmap];0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10488292	0.86[CHB][hapmap];0.81[CHD][hapmap];0.95[JPT][hapmap]
rs10808192	0.91[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs10953914	0.84[ASN][1000 genomes]
rs10953915	0.84[ASN][1000 genomes]
rs10953916	0.91[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap];0.81[TSI][hapmap];0.84[ASN][1000 genomes]
rs10953917	0.91[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11761549	0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11763043	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11764191	0.84[ASN][1000 genomes]
rs11765472	0.84[CEU][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.92[TSI][hapmap];0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11767599	0.84[CEU][hapmap];0.91[CHB][hapmap];0.83[CHD][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap];0.92[TSI][hapmap];0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11769563	0.90[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11773299	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12531000	0.84[ASN][1000 genomes]
rs12531042	0.83[CEU][hapmap]
rs12531689	0.87[CHB][hapmap];0.82[CHD][hapmap];0.95[JPT][hapmap]
rs12539149	0.85[EUR][1000 genomes]
rs12672579	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs12673578	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs12706276	0.82[CEU][hapmap]
rs12706282	0.85[EUR][1000 genomes]
rs1476862	0.91[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17142724	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs17142737	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs17142741	0.87[CHB][hapmap];0.85[JPT][hapmap]
rs1861063	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs2192374	0.91[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs2402530	0.84[ASN][1000 genomes]
rs2402531	0.84[CEU][hapmap];0.91[CHB][hapmap];0.85[CHD][hapmap];0.90[JPT][hapmap];0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs28855094	0.84[ASN][1000 genomes]
rs41391947	0.87[CHB][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap]
rs4282509	0.91[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4534083	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6466745	0.84[CEU][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.92[TSI][hapmap];0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6466746	0.91[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap];0.81[TSI][hapmap];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6943313	0.84[ASN][1000 genomes]
rs6955059	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6962488	0.91[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs6965138	0.84[ASN][1000 genomes]
rs6978518	0.87[CHB][hapmap];0.81[JPT][hapmap];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6979386	0.94[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6980067	0.91[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap];0.81[TSI][hapmap];0.84[ASN][1000 genomes]
rs7776942	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7785421	0.84[CEU][hapmap]
rs7785571	0.80[CEU][hapmap]
rs7789981	0.91[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap];0.81[TSI][hapmap]
rs7793037	0.95[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs7793195	1.00[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs7793879	0.95[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs7793900	0.84[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7796685	0.91[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.81[TSI][hapmap];0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7798870	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7805718	0.91[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7810357	0.84[CEU][hapmap];0.84[TSI][hapmap];0.85[EUR][1000 genomes]
rs7810837	0.84[CEU][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.92[TSI][hapmap];0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7811775	0.84[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9942667	0.84[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024920	chr7:120002420-120083753	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv516686	chr7:120015843-120223084	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1026821	chr7:120020317-120190437	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120043200-120075000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:120056600-120056800	Weak transcription	GM12878-XiMat	blood

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