Variant report

Variant	rs9641642
Chromosome Location	chr7:120261978-120261979
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:120255038..120256549-chr7:120260668..120263169,2	MCF-7	breast:
2	chr7:120260960..120263312-chr7:120264903..120266573,2	K562	blood:

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10085878	0.91[CHD][hapmap];0.86[GIH][hapmap];0.95[JPT][hapmap]
rs10230753	1.00[JPT][hapmap]
rs10233829	0.81[JPT][hapmap]
rs10245507	0.81[JPT][hapmap]
rs10258480	1.00[JPT][hapmap]
rs10276390	0.81[JPT][hapmap]
rs10278347	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs10279812	0.81[JPT][hapmap]
rs10488298	0.81[JPT][hapmap]
rs10488299	0.81[JPT][hapmap]
rs10953918	0.81[JPT][hapmap]
rs11980474	0.83[CHD][hapmap];0.81[JPT][hapmap]
rs12530902	0.95[JPT][hapmap]
rs12531042	0.81[JPT][hapmap]
rs12531146	0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12531730	0.81[JPT][hapmap]
rs12537274	0.93[CHD][hapmap];1.00[JPT][hapmap]
rs12540785	0.90[CEU][hapmap];0.86[ASN][1000 genomes]
rs12706290	0.91[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs12706291	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12706292	0.87[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs13224331	0.91[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs13227896	0.87[ASN][1000 genomes]
rs13241174	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1358369	0.93[CHD][hapmap];1.00[JPT][hapmap]
rs1405835	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1405836	1.00[JPT][hapmap]
rs1527653	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs1569089	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs17132703	0.81[JPT][hapmap]
rs17142829	0.83[ASN][1000 genomes]
rs1881023	0.93[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap]
rs1881024	0.86[GIH][hapmap];0.95[JPT][hapmap]
rs1918465	0.91[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs1997229	1.00[JPT][hapmap]
rs2402539	0.95[JPT][hapmap]
rs3814461	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4464900	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs4610678	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs4727909	0.84[ASN][1000 genomes]
rs4727910	1.00[JPT][hapmap]
rs4730965	0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4730966	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs6466752	1.00[JPT][hapmap]
rs6948806	0.81[JPT][hapmap]
rs6950967	0.83[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap]
rs6951226	1.00[JPT][hapmap]
rs6966670	0.81[JPT][hapmap]
rs6978175	0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6979618	0.90[JPT][hapmap]
rs702415	1.00[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];0.88[EUR][1000 genomes]
rs702416	1.00[CEU][hapmap];0.82[CHB][hapmap];0.89[CHD][hapmap];0.86[JPT][hapmap];0.90[TSI][hapmap];0.88[EUR][1000 genomes]
rs7781883	0.83[ASN][1000 genomes]
rs7785421	0.81[JPT][hapmap]
rs7785571	0.81[CHD][hapmap]
rs7790906	0.93[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap]
rs7791822	0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap]
rs7791851	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7798075	0.81[JPT][hapmap]
rs7808260	0.83[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs802332	1.00[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap];0.88[EUR][1000 genomes]
rs802333	0.81[CHB][hapmap];0.93[CHD][hapmap]
rs802334	0.85[JPT][hapmap]
rs802335	0.86[CHD][hapmap];0.86[JPT][hapmap]
rs802336	1.00[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.95[EUR][1000 genomes]
rs802337	0.95[EUR][1000 genomes]
rs802339	0.90[JPT][hapmap]
rs802340	0.91[JPT][hapmap]
rs802345	0.81[JPT][hapmap]
rs802346	0.83[CHD][hapmap]
rs802347	0.81[JPT][hapmap]
rs802349	0.81[JPT][hapmap]
rs802352	0.81[JPT][hapmap]
rs802353	0.81[JPT][hapmap]
rs802355	0.83[CHD][hapmap];0.81[JPT][hapmap]
rs802356	0.81[JPT][hapmap]
rs802358	0.81[JPT][hapmap]
rs802360	0.81[JPT][hapmap]
rs802362	0.86[JPT][hapmap]
rs802363	0.88[EUR][1000 genomes]
rs802364	1.00[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap];0.88[EUR][1000 genomes]
rs802365	0.86[JPT][hapmap]
rs802366	0.83[EUR][1000 genomes]
rs802367	1.00[CEU][hapmap];0.82[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.90[TSI][hapmap];0.88[EUR][1000 genomes]
rs802368	0.91[EUR][1000 genomes]
rs802369	0.91[EUR][1000 genomes]
rs802371	1.00[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.91[EUR][1000 genomes]
rs802372	1.00[CEU][hapmap];0.82[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.90[TSI][hapmap];0.91[EUR][1000 genomes]
rs802374	0.86[CHD][hapmap];0.86[JPT][hapmap]
rs802377	0.88[CHD][hapmap];0.86[JPT][hapmap]
rs802378	0.85[JPT][hapmap]
rs9641639	0.82[JPT][hapmap]
rs9649423	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889117	chr7:120122040-120266458	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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