Variant report

Variant	rs12540785
Chromosome Location	chr7:120227047-120227048
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10278347	1.00[CEU][hapmap]
rs12531146	1.00[CEU][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12537274	0.80[ASN][1000 genomes]
rs12706290	1.00[CEU][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12706291	0.90[CEU][hapmap];0.90[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12706292	0.94[ASN][1000 genomes]
rs13224331	1.00[CEU][hapmap];0.82[YRI][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13227896	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13241174	0.88[ASN][1000 genomes]
rs1358369	0.80[ASN][1000 genomes]
rs1405835	1.00[CEU][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1569089	0.90[CEU][hapmap]
rs17142829	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1918465	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3814461	1.00[CEU][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4727909	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4730965	1.00[CEU][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4730966	1.00[CEU][hapmap]
rs6466752	0.82[ASN][1000 genomes]
rs6978175	1.00[CEU][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs702415	0.90[CEU][hapmap];0.82[YRI][hapmap]
rs702416	0.90[CEU][hapmap];0.82[YRI][hapmap]
rs7790906	0.82[ASN][1000 genomes]
rs7791822	0.90[CEU][hapmap]
rs7791851	1.00[CEU][hapmap]
rs802332	0.88[CEU][hapmap];0.81[YRI][hapmap]
rs802336	0.90[CEU][hapmap]
rs802360	0.82[YRI][hapmap]
rs802364	0.90[CEU][hapmap]
rs802367	0.90[CEU][hapmap];0.82[YRI][hapmap]
rs802369	0.82[AFR][1000 genomes]
rs802371	0.90[CEU][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes]
rs802372	0.90[CEU][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes]
rs9641642	0.90[CEU][hapmap]
rs9649423	1.00[CEU][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889117	chr7:120122040-120266458	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120220200-120227200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:120224600-120227200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr7:120224600-120228400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr7:120224600-120228600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr7:120224800-120227200	Weak transcription	Hela-S3	cervix
6	chr7:120225000-120230000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr7:120225200-120228600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr7:120225200-120229800	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr7:120225600-120249000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr7:120225800-120228600	Weak transcription	HUVEC	blood vessel
11	chr7:120227000-120229200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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