Variant report

Variant	rs1918465
Chromosome Location	chr7:120203483-120203484
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10085878	1.00[JPT][hapmap]
rs10230753	0.91[JPT][hapmap]
rs10258480	0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs10278347	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs12530902	0.91[JPT][hapmap]
rs12531146	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12537274	0.83[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs12540785	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12706290	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12706291	0.95[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12706292	0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs13224331	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13227896	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13241174	0.96[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs1358369	0.83[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs1405835	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1405836	0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs1527653	0.91[JPT][hapmap]
rs1527657	0.81[ASN][1000 genomes]
rs1569089	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs17142829	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1881023	0.95[JPT][hapmap]
rs1881024	1.00[JPT][hapmap]
rs1997229	0.91[JPT][hapmap]
rs2402539	0.91[JPT][hapmap]
rs3814461	1.00[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4464900	0.91[JPT][hapmap]
rs4610678	0.95[JPT][hapmap]
rs4727909	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4727910	0.91[JPT][hapmap]
rs4730963	0.81[ASN][1000 genomes]
rs4730965	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4730966	1.00[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap]
rs6466752	0.95[JPT][hapmap]
rs6950967	0.95[JPT][hapmap]
rs6951226	0.91[JPT][hapmap]
rs6978175	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6979618	0.82[JPT][hapmap]
rs702415	0.83[CHB][hapmap]
rs702416	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs7785571	0.82[CHB][hapmap]
rs7790906	0.95[JPT][hapmap]
rs7791822	0.85[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs7791851	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs7808260	0.91[JPT][hapmap]
rs802332	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs802333	0.81[CHB][hapmap]
rs802334	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs802335	0.81[JPT][hapmap]
rs802336	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs802340	0.87[JPT][hapmap]
rs802364	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs802367	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs802371	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs802372	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs802374	0.81[JPT][hapmap]
rs802377	0.81[JPT][hapmap]
rs9641642	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs9649423	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516686	chr7:120015843-120223084	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv889117	chr7:120122040-120266458	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120200400-120223000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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