Variant report

Variant	rs12706290
Chromosome Location	chr7:120196168-120196169
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:120191134..120192918-chr7:120193814..120196411,2	K562	blood:
2	chr7:120195175..120197471-chr7:120198217..120202322,3	K562	blood:
3	chr7:120191418..120193640-chr7:120194004..120197390,3	K562	blood:

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10085878	0.91[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10230753	0.95[JPT][hapmap]
rs10233829	0.92[YRI][hapmap]
rs10258480	0.95[JPT][hapmap]
rs10278347	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.90[TSI][hapmap]
rs10279812	0.92[YRI][hapmap]
rs10953918	0.92[YRI][hapmap]
rs11980474	0.86[CHD][hapmap];0.92[YRI][hapmap];0.80[AFR][1000 genomes]
rs12530902	0.91[JPT][hapmap]
rs12531146	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12537274	0.83[CHB][hapmap];0.93[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.84[TSI][hapmap]
rs12540785	1.00[CEU][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12706291	0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12706292	0.95[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs13224331	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13227896	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13241174	0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs1358369	0.83[CHB][hapmap];0.93[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.84[TSI][hapmap]
rs1405835	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1405836	0.95[JPT][hapmap]
rs1527653	0.95[JPT][hapmap]
rs1569089	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap]
rs17142829	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1881023	0.93[CHD][hapmap];0.95[JPT][hapmap]
rs1881024	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1918465	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1997229	0.95[JPT][hapmap]
rs2402539	0.81[GIH][hapmap];0.91[JPT][hapmap]
rs3814461	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4464900	0.95[JPT][hapmap]
rs4610678	0.95[JPT][hapmap]
rs4727909	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4727910	0.95[JPT][hapmap]
rs4730965	0.92[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.82[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4730966	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs6466752	0.95[JPT][hapmap]
rs6948806	0.86[LWK][hapmap];0.92[YRI][hapmap]
rs6950967	0.93[CHD][hapmap];0.95[JPT][hapmap]
rs6951226	0.95[JPT][hapmap]
rs6966670	0.92[YRI][hapmap]
rs6978175	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.82[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6979618	0.86[JPT][hapmap]
rs702414	0.91[YRI][hapmap]
rs702415	0.82[CHB][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs702416	0.86[ASW][hapmap];0.82[CHB][hapmap];0.90[CHD][hapmap];0.81[JPT][hapmap];0.84[LWK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs7785571	0.82[CHB][hapmap];0.84[CHD][hapmap]
rs7790906	0.93[CHD][hapmap];0.95[JPT][hapmap]
rs7791822	0.85[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.90[TSI][hapmap]
rs7791851	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.90[TSI][hapmap]
rs7798075	0.81[YRI][hapmap]
rs7808260	0.95[JPT][hapmap]
rs802332	0.81[CHB][hapmap];0.80[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs802333	0.81[CHB][hapmap];0.95[CHD][hapmap];0.81[ASN][1000 genomes]
rs802334	0.80[CHB][hapmap];0.81[JPT][hapmap]
rs802335	0.88[CHD][hapmap];0.81[JPT][hapmap]
rs802336	0.82[CHB][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs802337	0.89[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs802339	0.85[JPT][hapmap]
rs802340	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs802346	0.86[CHD][hapmap];0.86[LWK][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes]
rs802349	0.92[YRI][hapmap];0.84[AFR][1000 genomes]
rs802351	0.81[AFR][1000 genomes]
rs802353	0.92[YRI][hapmap];0.80[AFR][1000 genomes]
rs802355	0.86[CHD][hapmap];0.88[LWK][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes]
rs802358	0.88[YRI][hapmap];0.85[AFR][1000 genomes]
rs802360	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs802362	0.81[JPT][hapmap]
rs802363	0.87[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs802364	0.81[CHB][hapmap];0.80[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs802365	0.81[JPT][hapmap]
rs802366	0.81[AFR][1000 genomes]
rs802367	0.86[ASW][hapmap];0.82[CHB][hapmap];0.95[CHD][hapmap];0.81[JPT][hapmap];0.86[LWK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs802368	0.89[AFR][1000 genomes]
rs802369	0.92[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs802371	0.82[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs802372	0.86[ASW][hapmap];0.82[CHB][hapmap];0.95[CHD][hapmap];0.81[JPT][hapmap];0.91[LWK][hapmap];0.80[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs802374	0.88[CHD][hapmap];0.81[JPT][hapmap]
rs802377	0.88[CHD][hapmap];0.81[JPT][hapmap]
rs802378	0.80[JPT][hapmap]
rs9641642	0.91[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs9649423	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516686	chr7:120015843-120223084	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv889117	chr7:120122040-120266458	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120190800-120196200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:120191000-120196200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr7:120192200-120196200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr7:120192600-120196200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr7:120192800-120196200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr7:120193000-120196200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr7:120196000-120196600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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