Variant report

Variant	rs4727909
Chromosome Location	chr7:120205881-120205882
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:120199964..120202545-chr7:120204366..120206093,2	K562	blood:
2	chr7:120204677..120206283-chr7:120210805..120213588,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10258480	0.82[ASN][1000 genomes]
rs11980474	0.82[AFR][1000 genomes]
rs12531146	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12537274	0.82[ASN][1000 genomes]
rs12540785	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12706290	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12706291	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12706292	0.92[ASN][1000 genomes]
rs13224331	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13227896	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13241174	0.86[ASN][1000 genomes]
rs1358369	0.82[ASN][1000 genomes]
rs1405835	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1405836	0.82[ASN][1000 genomes]
rs1527657	0.82[ASN][1000 genomes]
rs17142829	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1918465	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3814461	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4730963	0.82[ASN][1000 genomes]
rs4730965	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6948806	0.81[AFR][1000 genomes]
rs6966670	0.81[AFR][1000 genomes]
rs6978175	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs702414	0.81[AFR][1000 genomes]
rs702415	0.90[AFR][1000 genomes]
rs702416	0.89[AFR][1000 genomes]
rs802332	0.88[AFR][1000 genomes]
rs802337	0.91[AFR][1000 genomes]
rs802346	0.86[AFR][1000 genomes]
rs802349	0.86[AFR][1000 genomes]
rs802351	0.82[AFR][1000 genomes]
rs802353	0.82[AFR][1000 genomes]
rs802355	0.87[AFR][1000 genomes]
rs802358	0.87[AFR][1000 genomes]
rs802360	0.89[AFR][1000 genomes]
rs802363	0.88[AFR][1000 genomes]
rs802364	0.90[AFR][1000 genomes]
rs802366	0.82[AFR][1000 genomes]
rs802367	0.90[AFR][1000 genomes]
rs802368	0.91[AFR][1000 genomes]
rs802369	0.94[AFR][1000 genomes]
rs802371	0.92[AFR][1000 genomes]
rs802372	0.92[AFR][1000 genomes]
rs9649423	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516686	chr7:120015843-120223084	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv889117	chr7:120122040-120266458	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120200400-120223000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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