Variant report

Variant	rs802369
Chromosome Location	chr7:120168314-120168315
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10233829	0.82[AFR][1000 genomes]
rs10274789	0.84[AFR][1000 genomes]
rs10279267	0.85[ASN][1000 genomes]
rs10488298	0.83[ASN][1000 genomes]
rs11980474	0.88[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs12531146	0.84[AFR][1000 genomes]
rs12540785	0.82[AFR][1000 genomes]
rs12666810	0.82[ASN][1000 genomes]
rs12706290	0.92[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12706291	0.84[AFR][1000 genomes]
rs13224331	0.96[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs1405835	0.95[AFR][1000 genomes]
rs17142829	0.94[AFR][1000 genomes]
rs3814461	0.87[AFR][1000 genomes]
rs4727909	0.94[AFR][1000 genomes]
rs4730965	0.87[AFR][1000 genomes]
rs66473061	0.84[ASN][1000 genomes]
rs66597280	0.82[ASN][1000 genomes]
rs67181710	0.83[ASN][1000 genomes]
rs68060610	0.82[ASN][1000 genomes]
rs6948806	0.87[AFR][1000 genomes]
rs6966670	0.87[AFR][1000 genomes]
rs6978175	0.88[AFR][1000 genomes]
rs702414	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs702415	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs702416	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs723908	0.80[ASN][1000 genomes]
rs7785571	0.84[ASN][1000 genomes]
rs802332	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs802333	1.00[ASN][1000 genomes]
rs802334	0.88[ASN][1000 genomes]
rs802335	0.88[ASN][1000 genomes]
rs802336	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs802337	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs802338	0.88[ASN][1000 genomes]
rs802339	0.88[ASN][1000 genomes]
rs802340	0.93[ASN][1000 genomes]
rs802345	0.80[ASN][1000 genomes]
rs802346	0.88[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs802347	0.80[ASN][1000 genomes]
rs802348	0.92[ASN][1000 genomes]
rs802349	0.91[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs802351	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs802352	0.92[ASN][1000 genomes]
rs802353	0.88[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs802354	0.80[ASN][1000 genomes]
rs802355	0.91[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs802356	0.80[ASN][1000 genomes]
rs802357	0.80[ASN][1000 genomes]
rs802358	0.91[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs802360	0.92[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs802362	0.88[ASN][1000 genomes]
rs802363	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs802364	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs802365	0.88[ASN][1000 genomes]
rs802366	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs802367	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs802368	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs802370	0.88[ASN][1000 genomes]
rs802371	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs802372	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs802373	0.88[ASN][1000 genomes]
rs802374	0.88[ASN][1000 genomes]
rs802376	0.88[ASN][1000 genomes]
rs802377	0.88[ASN][1000 genomes]
rs802378	0.88[ASN][1000 genomes]
rs9641639	0.84[ASN][1000 genomes]
rs9641640	0.83[ASN][1000 genomes]
rs9649423	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516686	chr7:120015843-120223084	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1026821	chr7:120020317-120190437	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv889116	chr7:120098304-120180671	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv889117	chr7:120122040-120266458	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120162400-120180600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:120166000-120178600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:120166200-120179200	Weak transcription	H1 Cell Line	embryonic stem cell

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